May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
L32 - L35
UniProt: P80339 - Q5SKU1
Length: 125
Sequences: 855
Seq/Len: 7.07
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2d58 3v2f58Contact Map
2j002j0158 2j0358Contact Map
4juw4jux58Contact Map
4kix4kix03 4kiz03 4kj103 4kj303Contact Map
4kj54kj503 4kj703 4kj903 4kjb03Contact Map
2zjr2zjrZ3Contact Map
4btc4btd58Contact Map
3uyd3uye58 3uyg58Contact Map
3v223v2358 3v2558Contact Map
4gd13r8s03 3r8t03Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
19_R 17_T 0.94 0.01
21_S 29_K 0.90 0.01
42_P 58_I 0.89 0.01
6_V 54_E 0.86 0.01
34_P 25_M 0.82 0.01
6_V 45_G 0.75 0.01
55_R 18_A 0.75 0.01
12_S 6_T 0.74 0.01
21_S 8_K 0.72 0.01
26_T 56_E 0.71 0.01
38_A 14_V 0.71 0.01
57_V 2_P 0.70 0.01
38_A 19_S 0.70 0.01
37_K 39_K 0.68 0.01
5_P 44_K 0.68 0.01
10_K 9_G 0.66 0.01
55_R 42_R 0.66 0.01
4_H 44_K 0.65 0.01
38_A 15_K 0.65 0.01
39_M 38_G 0.65 0.01
10_K 4_M 0.63 0.01
13_K 62_L 0.63 0.01
9_K 32_L 0.62 0.01
37_K 14_V 0.62 0.01
16_R 56_E 0.61 0.01
11_T 9_G 0.61 0.01
29_T 37_S 0.61 0.01
26_T 28_G 0.61 0.01
41_P 34_W 0.61 0.01
51_Y 25_M 0.61 0.01
33_C 4_M 0.60 0.01
40_K 28_G 0.60 0.01
18_A 55_A 0.60 0.01
58_L 1_M 0.60 0.01
5_P 60_L 0.59 0.01
58_L 46_R 0.58 0.01
32_P 43_Q 0.58 0.01
58_L 16_I 0.58 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.1986 seconds.