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OPENSEQ.org
L32 - S08
UniProt: P80339 - Q5SHQ2
Length: 198
Sequences: 899
Seq/Len: 4.81
I_Prob: 0.12
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cH 3v2d5 3v2eH 3v2f5Contact Map
2j002j00H 2j015 2j02H 2j035Contact Map
4juw4juwH 4jux5Contact Map
4kix4kix0 4kiyH 4kiz0 4kj0H 4kj10 4kj2H 4kj30 4kj4HContact Map
4kj54kj50 4kj6H 4kj70 4kj8H 4kj90 4kjaH 4kjb0 4kjcHContact Map
3uyd3uydK 3uye5 3uyfK 3uyg5Contact Map
4gd13r8s0 3r8t0 4gd1H 4gd2HContact Map
3knh3knhH 3kni5 3knjH 3knk5Contact Map
3ohc3ohcH 3ohdH 3ohj5 3ohk5Contact Map
3f1e3f1eH 3f1f5 3f1gH 3f1h5Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
13_K 3_T 1.13 0.12
12_S 90_G 1.03 0.09
34_P 128_G 0.87 0.05
55_R 118_V 0.87 0.05
17_D 40_A 0.86 0.05
16_R 137_V 0.79 0.04
12_S 7_A 0.79 0.04
30_L 32_K 0.78 0.04
43_H 64_K 0.78 0.04
35_E 84_R 0.77 0.04
53_A 135_C 0.76 0.03
36_C 5_P 0.76 0.03
5_P 9_M 0.74 0.03
5_P 39_L 0.74 0.03
15_R 119_L 0.74 0.03
55_R 22_E 0.74 0.03
27_P 134_I 0.73 0.03
4_H 115_S 0.72 0.03
29_T 113_S 0.71 0.03
10_K 6_I 0.69 0.03
44_T 38_I 0.69 0.03
54_G 65_Y 0.68 0.03
41_P 83_I 0.67 0.02
13_K 64_K 0.67 0.02
10_K 83_I 0.67 0.02
30_L 120_T 0.67 0.02
32_P 38_I 0.66 0.02
34_P 3_T 0.66 0.02
54_G 39_L 0.65 0.02
13_K 104_R 0.64 0.02
48_E 61_V 0.63 0.02
53_A 6_I 0.63 0.02
15_R 102_R 0.63 0.02
48_E 46_K 0.63 0.02
10_K 24_T 0.63 0.02
14_A 51_V 0.62 0.02
8_K 9_M 0.62 0.02
54_G 27_P 0.62 0.02
29_T 104_R 0.62 0.02
46_C 82_H 0.62 0.02
40_K 31_F 0.62 0.02
29_T 129_V 0.61 0.02
10_K 95_V 0.61 0.02
45_V 79_V 0.61 0.02
37_K 112_L 0.61 0.02
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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