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OPENSEQ.org
L32 - S04
UniProt: P80339 - P80373
Length: 269
Sequences: 885
Seq/Len: 3.34
I_Prob: 0.04
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cD 3v2d5 3v2eD 3v2f5Contact Map
2j002j00D 2j015 2j02D 2j035Contact Map
4juw4juwD 4jux5Contact Map
4kix4kix0 4kiyD 4kiz0 4kj0D 4kj10 4kj2D 4kj30 4kj4DContact Map
4kj54kj50 4kj6D 4kj70 4kj8D 4kj90 4kjaD 4kjb0 4kjcDContact Map
3uyd3uydG 3uye5 3uyfG 3uyg5Contact Map
4gd13r8s0 3r8t0 4gd1D 4gd2DContact Map
3ohc3ohcD 3ohdD 3ohj5 3ohk5Contact Map
3knh3knhD 3kni5 3knjD 3knk5Contact Map
3ohy3ohyD 3ohz5 3oi0D 3oi15Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
55_R 131_R 1.10 0.04
34_P 190_D 0.96 0.03
8_K 209_R 0.92 0.02
51_Y 117_A 0.90 0.02
10_K 91_S 0.81 0.02
36_C 117_A 0.80 0.02
45_V 105_V 0.76 0.01
25_L 193_D 0.75 0.01
31_V 209_R 0.73 0.01
56_K 64_L 0.73 0.01
51_Y 103_N 0.71 0.01
28_P 65_R 0.70 0.01
45_V 55_A 0.69 0.01
5_P 106_Y 0.68 0.01
8_K 173_W 0.67 0.01
54_G 70_I 0.66 0.01
6_V 209_R 0.66 0.01
10_K 53_D 0.65 0.01
34_P 126_I 0.64 0.01
34_P 121_V 0.63 0.01
36_C 187_R 0.63 0.01
9_K 186_L 0.62 0.01
34_P 8_V 0.62 0.01
53_A 203_V 0.61 0.01
55_R 140_V 0.60 0.01
17_D 136_P 0.60 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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