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YDCT - YDCV
UniProt: P77795 - P0AFR9
Length: 601
Sequences: 6579
Seq/Len: 11.46
I_Prob: 1.00
YDCT - Uncharacterized ABC transporter ATP-binding protein YdcT
Paralog alert: 0.85 [within 20: 0.14] - ratio of genomes with paralogs
Cluster includes: ARTP BTUD CCMA CYSA DDPD DDPF DPPD DPPF FBPC FECE FEPC FHUC FTSE GLNQ GLTL HISP LIVF LIVG LOLD LPTB MALK METN MLAF MODC NIKD NIKE OPPD OPPF PHNC PHNK PHNL POTA POTG PROV PSTB SAPD SAPF SSUB SUFC TAUB THIQ UGPC YADG YBBA YBBL YCJV YDCT YECC YEHX YHDZ YNJD ZNUC 		YDCV - Inner membrane ABC transporter permease protein YdcV
Paralog alert: 0.96 [within 20: 0.88] - ratio of genomes with paralogs
Cluster includes: CYST CYSW MALG MODB POTB POTC POTH POTI PSTA PSTC UGPA UGPE YCJO YCJP YDCU YDCV
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3rlfAB:G:FContact Map
3d31AB:CDContact Map
2onkABGF:CHDIContact Map
3tuiCHDG:AEBFContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
48_R 165_E 2.95 1.00
99_Y 180_Y 2.84 1.00
99_Y 167_S 2.12 0.99
102_M 180_Y 2.04 0.99
53_F 169_D 1.77 0.97
74_W 168_M 1.77 0.97
88_F 170_L 1.71 0.97
84_D 162_S 1.58 0.95
100_G 170_L 1.36 0.89
103_V 180_Y 1.03 0.64
140_R 162_S 1.02 0.62
103_V 176_Q 1.00 0.60
80_T 169_D 0.99 0.60
90_H 185_N 0.97 0.57
99_Y 172_A 0.96 0.56
91_M 180_Y 0.91 0.49
103_V 172_A 0.91 0.49
78_V 169_D 0.90 0.49
82_F 166_A 0.83 0.39
79_N 169_D 0.83 0.39
151_N 170_L 0.78 0.33
54_E 165_E 0.76 0.30
74_W 174_G 0.74 0.28
84_D 160_S 0.72 0.26
75_E 173_N 0.72 0.26
103_V 171_G 0.62 0.16
74_W 173_N 0.57 0.12
151_N 169_D 0.55 0.11
104_K 171_G 0.53 0.10
91_M 181_V 0.52 0.09
73_P 168_M 0.50 0.08
89_P 163_L 0.50 0.08
53_F 165_E 0.49 0.08
86_A 166_A 0.49 0.08
89_P 185_N 0.49 0.07
73_P 169_D 0.47 0.07
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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