May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

HCAD - ODO2
UniProt: P77650 - P0AFG6
Length: 805
Sequences: 1274
Seq/Len: 1.64
I_Prob: 0.24

HCAD - 3-phenylpropionate/cinnamic acid dioxygenase ferredoxin--NAD(+) reductase component
Paralog alert: 0.87 [within 20: 0.11] - ratio of genomes with paralogs
Cluster includes: DHNA DLDH GSHR HCAD NORW STHA TRXB YKGC
ODO2 - Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex
Paralog alert: 0.79 [within 20: 0.02] - ratio of genomes with paralogs
Cluster includes: ODO2 ODP2
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
309_L 120_R 1.50 0.24
360_L 135_T 0.99 0.05
208_A 355_P 0.85 0.03
177_A 292_M 0.84 0.03
34_F 248_R 0.84 0.03
301_I 348_M 0.80 0.02
231_D 240_K 0.78 0.02
157_L 373_S 0.77 0.02
208_A 135_T 0.76 0.02
7_I 27_P 0.75 0.02
190_R 234_F 0.73 0.02
237_I 70_S 0.71 0.02
371_E 270_S 0.71 0.02
85_G 29_D 0.71 0.02
374_P 288_D 0.71 0.02
299_A 390_T 0.70 0.02
271_F 77_L 0.70 0.02
306_M 220_Y 0.70 0.02
242_N 240_K 0.70 0.02
259_I 317_T 0.69 0.01
149_I 31_V 0.69 0.01
194_Q 379_I 0.69 0.01
328_L 198_S 0.69 0.01
236_G 20_V 0.69 0.01
38_R 186_K 0.68 0.01
105_F 305_K 0.68 0.01
102_D 239_V 0.68 0.01
360_L 33_R 0.68 0.01
74_H 92_E 0.67 0.01
73_V 271_M 0.66 0.01
160_A 117_A 0.66 0.01
316_P 106_L 0.66 0.01
99_W 315_D 0.66 0.01
164_T 118_I 0.66 0.01
311_L 120_R 0.65 0.01
152_A 123_A 0.65 0.01
270_I 56_I 0.65 0.01
299_A 134_G 0.65 0.01
105_F 286_D 0.65 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.4158 seconds.