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OPENSEQ.org

DXS - EX7S
UniProt: P77488 - P0A8G9
Length: 700
Sequences: 433
Seq/Len: 0.63
I_Prob: 0.00

DXS - 1-deoxy-D-xylulose-5-phosphate synthase
Paralog alert: 0.76 [within 20: 0.02] - ratio of genomes with paralogs
Cluster includes: DXS TKT1 TKT2
EX7S - Exodeoxyribonuclease 7 small subunit
Paralog alert: 0.00 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: EX7S
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
177_I 47_R 1.39 0.00
173_D 39_F 1.26 0.00
166_H 39_F 1.23 0.00
409_I 25_L 1.17 0.00
202_G 31_P 1.13 0.00
400_Y 22_V 1.11 0.00
582_V 74_P 1.08 0.00
231_E 33_E 1.07 0.00
448_I 75_F 1.06 0.00
217_S 60_V 1.05 0.00
258_D 58_Q 1.03 0.00
326_G 39_F 1.02 0.00
47_S 49_G 1.01 0.00
449_M 28_G 0.99 0.00
117_V 25_L 0.98 0.00
476_Y 52_K 0.97 0.00
558_E 25_L 0.97 0.00
50_F 14_A 0.96 0.00
188_N 39_F 0.96 0.00
593_P 35_A 0.96 0.00
87_I 45_L 0.95 0.00
535_V 10_S 0.95 0.00
56_T 25_L 0.95 0.00
613_A 7_A 0.94 0.00
310_C 16_S 0.94 0.00
200_L 60_V 0.92 0.00
432_Q 49_G 0.91 0.00
53_G 40_E 0.91 0.00
597_Q 59_R 0.90 0.00
121_G 43_V 0.89 0.00
301_V 21_I 0.89 0.00
167_A 15_L 0.89 0.00
120_V 50_Q 0.89 0.00
300_A 14_A 0.88 0.00
225_L 25_L 0.88 0.00
303_K 39_F 0.88 0.00
558_E 39_F 0.88 0.00
326_G 74_P 0.87 0.00
305_D 31_P 0.87 0.00
209_R 21_I 0.87 0.00
254_V 39_F 0.87 0.00
166_H 43_V 0.86 0.00
606_L 22_V 0.86 0.00
102_G 29_D 0.86 0.00
41_D 2_P 0.85 0.00
409_I 76_T 0.85 0.00
245_E 22_V 0.85 0.00
501_R 31_P 0.84 0.00
73_Q 76_T 0.84 0.00
591_F 14_A 0.83 0.00
286_R 68_E 0.83 0.00
109_W 35_A 0.83 0.00
149_V 29_D 0.83 0.00
66_V 41_R 0.83 0.00
439_Y 23_T 0.82 0.00
523_E 16_S 0.82 0.00
270_R 47_R 0.82 0.00
30_K 74_P 0.82 0.00
550_H 41_R 0.82 0.00
199_L 44_Q 0.81 0.00
458_R 34_E 0.81 0.00
188_N 41_R 0.81 0.00
467_Y 78_D 0.80 0.00
531_D 56_A 0.80 0.00
356_S 39_F 0.80 0.00
295_P 36_L 0.80 0.00
527_A 36_L 0.80 0.00
413_P 21_I 0.80 0.00
524_S 77_P 0.79 0.00
106_P 39_F 0.79 0.00
493_P 59_R 0.79 0.00
591_F 41_R 0.78 0.00
591_F 15_L 0.78 0.00
616_K 16_S 0.77 0.00
149_V 72_L 0.77 0.00
312_P 72_L 0.77 0.00
106_P 49_G 0.77 0.00
149_V 54_Q 0.77 0.00
198_Q 75_F 0.77 0.00
32_C 49_G 0.76 0.00
278_L 61_Q 0.76 0.00
246_L 61_Q 0.75 0.00
540_E 78_D 0.74 0.00
281_M 35_A 0.74 0.00
550_H 39_F 0.74 0.00
275_P 45_L 0.74 0.00
426_A 39_F 0.74 0.00
199_L 65_S 0.74 0.00
169_D 21_I 0.74 0.00
197_A 59_R 0.73 0.00
236_M 24_R 0.73 0.00
171_R 35_A 0.73 0.00
15_D 78_D 0.73 0.00
403_V 50_Q 0.73 0.00
188_N 14_A 0.73 0.00
239_P 50_Q 0.73 0.00
273_K 34_E 0.73 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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