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OPENSEQ.org

PGMB - YCJR
UniProt: P77366 - P76044
Length: 481
Sequences: 449
Seq/Len: 0.96
I_Prob: 0.00

PGMB - Beta-phosphoglucomutase
Paralog alert: 0.91 [within 20: 0.14] - ratio of genomes with paralogs
Cluster includes: GPH PGMB YFBT YIEH YIGB YIHX YJJG YNIC YQAB YRFG
YCJR - Uncharacterized protein YcjR
Paralog alert: 0.70 [within 20: 0.18] - ratio of genomes with paralogs
Cluster includes: END4 FRLC HYI SGBU ULAE YCJR YGBM
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
188_V 162_A 1.02 0.00
102_L 45_K 0.98 0.00
170_I 23_K 0.95 0.00
16_D 49_K 0.94 0.00
162_V 259_L 0.94 0.00
8_F 172_K 0.89 0.00
105_L 26_G 0.88 0.00
180_I 169_N 0.84 0.00
101_L 23_K 0.84 0.00
165_Q 127_D 0.83 0.00
7_I 225_F 0.79 0.00
86_L 31_E 0.78 0.00
162_V 189_N 0.78 0.00
116_S 131_V 0.78 0.00
170_I 142_V 0.78 0.00
48_S 214_P 0.78 0.00
133_F 224_L 0.77 0.00
37_D 85_L 0.76 0.00
130_L 42_E 0.74 0.00
103_A 50_E 0.74 0.00
180_I 141_T 0.73 0.00
73_Q 211_R 0.72 0.00
8_F 95_G 0.72 0.00
137_C 130_R 0.72 0.00
42_E 216_S 0.72 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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