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OPENSEQ.org
RNFD - RNFE
UniProt: P76182 - P77179
Length: 583
Sequences: 693
Seq/Len: 1.24
I_Prob: 0.70
RNFD - Electron transport complex protein RnfD
Paralog alert: 0.32 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: RNFD 		RNFE - Electron transport complex protein RnfE
Paralog alert: 0.31 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: RNFA RNFE
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
135_F 183_F 1.84 0.70
136_P 184_L 1.61 0.51
250_V 58_T 1.40 0.33
292_T 141_A 1.26 0.22
108_I 198_L 1.22 0.20
89_I 44_A 1.18 0.18
327_A 67_I 1.17 0.17
302_I 209_R 1.15 0.16
116_L 43_L 1.10 0.13
231_G 202_G 1.07 0.12
35_Q 140_C 1.07 0.12
232_V 56_I 1.06 0.11
296_T 78_S 1.04 0.10
240_I 70_P 1.03 0.10
226_A 204_Y 1.02 0.10
47_I 60_R 1.02 0.10
314_I 101_F 1.01 0.10
294_S 107_T 1.01 0.09
126_I 118_F 1.00 0.09
80_L 151_I 0.99 0.09
209_P 56_I 0.98 0.08
29_V 176_I 0.98 0.08
89_I 146_G 0.98 0.08
96_W 10_Q 0.98 0.08
91_P 31_V 0.96 0.08
68_S 58_T 0.96 0.08
211_Y 85_M 0.95 0.07
290_P 107_T 0.94 0.07
136_P 39_L 0.94 0.07
127_G 88_N 0.93 0.07
184_S 145_L 0.92 0.07
333_I 84_Q 0.92 0.07
340_Y 15_N 0.92 0.06
293_A 73_V 0.92 0.06
339_D 21_Q 0.91 0.06
108_I 197_G 0.91 0.06
311_V 33_S 0.91 0.06
331_A 118_F 0.91 0.06
11_T 59_L 0.91 0.06
142_W 197_G 0.90 0.06
337_L 196_L 0.90 0.06
250_V 176_I 0.89 0.06
229_A 39_L 0.89 0.06
104_F 183_F 0.89 0.06
304_G 113_G 0.89 0.06
142_W 101_F 0.89 0.06
130_V 183_F 0.88 0.06
339_D 56_I 0.88 0.06
56_L 144_V 0.88 0.06
27_A 79_V 0.88 0.05
296_T 71_I 0.88 0.05
326_F 158_F 0.88 0.05
80_L 75_I 0.87 0.05
334_T 138_A 0.87 0.05
327_A 23_L 0.87 0.05
76_N 138_A 0.87 0.05
102_T 194_I 0.87 0.05
323_G 196_L 0.86 0.05
17_T 86_L 0.86 0.05
272_I 85_M 0.86 0.05
294_S 12_L 0.86 0.05
10_Y 196_L 0.86 0.05
313_L 39_L 0.86 0.05
253_A 128_A 0.86 0.05
309_L 185_L 0.85 0.05
225_L 82_A 0.85 0.05
335_V 102_I 0.85 0.05
139_M 190_P 0.85 0.05
280_M 206_I 0.85 0.05
270_P 44_A 0.85 0.05
276_S 38_A 0.85 0.05
237_Q 141_A 0.84 0.05
113_Y 108_N 0.84 0.04
136_P 188_L 0.84 0.04
37_W 132_F 0.83 0.04
111_Q 131_G 0.83 0.04
44_L 75_I 0.83 0.04
292_T 35_A 0.83 0.04
135_F 134_I 0.83 0.04
318_G 145_L 0.83 0.04
25_L 118_F 0.82 0.04
37_W 198_L 0.82 0.04
47_I 47_L 0.82 0.04
133_I 190_P 0.81 0.04
323_G 110_I 0.81 0.04
49_L 87_I 0.81 0.04
294_S 38_A 0.81 0.04
91_P 102_I 0.81 0.04
250_V 47_L 0.81 0.04
116_L 188_L 0.81 0.04
96_W 102_I 0.80 0.04
131_L 38_A 0.80 0.04
53_S 46_T 0.80 0.04
120_P 178_H 0.80 0.04
43_T 41_L 0.80 0.04
67_Q 90_Y 0.80 0.04
211_Y 199_M 0.80 0.04
236_W 56_I 0.79 0.04
132_L 45_T 0.79 0.04
56_L 124_P 0.79 0.04
112_L 198_L 0.79 0.04
55_L 176_I 0.79 0.04
43_T 73_V 0.79 0.04
17_T 101_F 0.79 0.04
162_I 41_L 0.79 0.04
108_I 33_S 0.79 0.04
201_S 152_I 0.79 0.04
309_L 202_G 0.79 0.04
246_L 126_L 0.79 0.04
54_A 157_L 0.78 0.04
194_T 88_N 0.78 0.04
233_W 56_I 0.78 0.04
245_P 70_P 0.78 0.04
186_A 189_P 0.78 0.04
132_L 40_G 0.78 0.04
346_V 113_G 0.78 0.04
55_L 58_T 0.78 0.03
347_Y 28_L 0.78 0.03
327_A 18_A 0.78 0.03
129_V 102_I 0.77 0.03
126_I 129_L 0.77 0.03
17_T 40_G 0.77 0.03
184_S 136_M 0.77 0.03
337_L 102_I 0.77 0.03
302_I 157_L 0.77 0.03
10_Y 120_A 0.77 0.03
249_L 117_A 0.77 0.03
66_K 131_G 0.77 0.03
135_F 140_C 0.77 0.03
87_V 194_I 0.77 0.03
304_G 112_V 0.76 0.03
108_I 87_I 0.76 0.03
179_G 156_T 0.76 0.03
133_I 40_G 0.76 0.03
284_F 82_A 0.76 0.03
96_W 124_P 0.76 0.03
293_A 112_V 0.76 0.03
278_A 164_L 0.76 0.03
185_Q 187_M 0.76 0.03
335_V 71_I 0.75 0.03
281_L 100_I 0.75 0.03
225_L 60_R 0.75 0.03
102_T 107_T 0.75 0.03
116_L 11_G 0.75 0.03
285_F 85_M 0.75 0.03
206_M 165_L 0.75 0.03
127_G 210_M 0.75 0.03
185_Q 71_I 0.75 0.03
182_G 157_L 0.75 0.03
187_T 16_N 0.75 0.03
326_F 92_F 0.75 0.03
121_F 59_L 0.75 0.03
36_L 63_T 0.75 0.03
240_I 106_V 0.75 0.03
272_I 21_Q 0.74 0.03
46_Q 112_V 0.74 0.03
232_V 61_H 0.74 0.03
36_L 57_S 0.74 0.03
282_G 12_L 0.74 0.03
284_F 94_L 0.74 0.03
85_L 78_S 0.74 0.03
268_A 145_L 0.74 0.03
229_A 174_V 0.74 0.03
345_R 56_I 0.74 0.03
67_Q 111_V 0.73 0.03
285_F 60_R 0.73 0.03
188_P 30_A 0.73 0.03
111_Q 32_T 0.73 0.03
141_S 61_H 0.73 0.03
63_K 140_C 0.73 0.03
238_K 58_T 0.73 0.03
113_Y 85_M 0.73 0.03
335_V 78_S 0.73 0.03
338_I 53_N 0.73 0.03
109_A 75_I 0.73 0.03
142_W 188_L 0.72 0.03
35_Q 186_A 0.72 0.03
113_Y 109_C 0.72 0.03
128_Y 18_A 0.72 0.03
112_L 19_L 0.72 0.03
326_F 97_S 0.72 0.03
211_Y 75_I 0.72 0.03
329_L 101_F 0.72 0.03
211_Y 160_G 0.72 0.03
232_V 125_A 0.72 0.03
72_T 138_A 0.72 0.03
258_L 164_L 0.72 0.03
11_T 78_S 0.72 0.03
314_I 189_P 0.72 0.03
133_I 85_M 0.72 0.03
291_V 192_A 0.72 0.03
229_A 93_G 0.72 0.03
193_K 188_L 0.72 0.03
310_L 23_L 0.72 0.03
132_L 27_P 0.72 0.03
68_S 60_R 0.72 0.03
310_L 194_I 0.71 0.03
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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