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OPENSEQ.org

YNFH - YSAA
UniProt: P76173 - P56256
Length: 441
Sequences: 288
Seq/Len: 0.67
I_Prob: 0.00

YNFH - Anaerobic dimethyl sulfoxide reductase chain YnfH
Paralog alert: 0.71 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: DMSC YNFH
YSAA - Putative electron transport protein YsaA
Paralog alert: 0.65 [within 20: 0.32] - ratio of genomes with paralogs
Cluster includes: DMSB HYCB HYDN HYFA NRFC YDHX YDHY YGFS YNFG YSAA
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
2vpzBF:CG:BFContact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
257_L 21_A 1.55 0.00
81_S 94_S 1.50 0.00
66_G 90_I 1.38 0.00
187_L 123_H 1.34 0.00
233_A 27_H 1.26 0.00
237_C 24_V 1.25 0.00
178_T 57_A 1.25 0.00
70_R 114_R 1.24 0.00
62_V 133_A 1.24 0.00
73_N 88_R 1.20 0.00
16_L 62_E 1.17 0.00
165_A 21_A 1.14 0.00
184_I 57_A 1.13 0.00
57_G 141_C 1.13 0.00
91_S 10_T 1.11 0.00
255_L 8_D 1.11 0.00
216_L 73_D 1.11 0.00
74_S 90_I 1.09 0.00
26_V 103_A 1.08 0.00
264_E 144_V 1.08 0.00
197_V 85_E 1.07 0.00
103_V 149_R 1.06 0.00
270_L 113_A 1.05 0.00
147_G 98_A 1.05 0.00
123_A 127_G 1.05 0.00
60_A 94_S 1.04 0.00
52_L 132_E 1.03 0.00
85_N 97_L 1.03 0.00
240_C 44_I 1.03 0.00
193_A 106_V 1.02 0.00
129_V 144_V 1.01 0.00
72_F 147_V 1.01 0.00
70_R 90_I 1.00 0.00
37_D 85_E 0.99 0.00
199_Q 21_A 0.99 0.00
191_A 57_A 0.99 0.00
70_R 84_V 0.99 0.00
29_I 85_E 0.99 0.00
192_C 98_A 0.98 0.00
148_Y 124_R 0.98 0.00
115_K 52_W 0.97 0.00
277_T 38_D 0.97 0.00
18_Q 139_L 0.97 0.00
59_I 111_K 0.96 0.00
192_C 57_A 0.96 0.00
57_G 38_D 0.96 0.00
159_L 149_R 0.95 0.00
126_V 148_Q 0.95 0.00
158_L 63_D 0.95 0.00
265_M 57_A 0.94 0.00
9_P 97_L 0.94 0.00
57_G 106_V 0.94 0.00
261_L 79_H 0.93 0.00
19_C 133_A 0.93 0.00
233_A 85_E 0.93 0.00
230_L 63_D 0.92 0.00
130_W 145_E 0.92 0.00
127_I 122_W 0.92 0.00
196_I 20_V 0.92 0.00
15_V 69_V 0.91 0.00
25_I 146_K 0.91 0.00
18_Q 55_A 0.91 0.00
183_I 20_V 0.90 0.00
106_I 87_T 0.90 0.00
23_A 27_H 0.90 0.00
208_S 90_I 0.90 0.00
91_S 68_N 0.90 0.00
69_L 119_D 0.90 0.00
213_A 69_V 0.89 0.00
257_L 37_P 0.89 0.00
208_S 86_Q 0.89 0.00
22_G 102_G 0.89 0.00
163_I 62_E 0.88 0.00
178_T 109_S 0.88 0.00
125_G 19_E 0.88 0.00
11_V 125_E 0.88 0.00
272_Y 97_L 0.88 0.00
93_F 30_Q 0.87 0.00
261_L 87_T 0.87 0.00
59_I 127_G 0.87 0.00
71_A 73_D 0.87 0.00
173_R 144_V 0.87 0.00
269_V 124_R 0.86 0.00
256_G 10_T 0.86 0.00
82_G 38_D 0.86 0.00
56_V 41_I 0.86 0.00
217_V 85_E 0.86 0.00
12_I 62_E 0.86 0.00
177_N 57_A 0.86 0.00
59_I 113_A 0.86 0.00
198_L 32_C 0.86 0.00
125_G 24_V 0.86 0.00
142_P 20_V 0.86 0.00
123_A 35_L 0.86 0.00
191_A 149_R 0.86 0.00
82_G 97_L 0.85 0.00
273_G 48_K 0.85 0.00
265_M 34_A 0.85 0.00
197_V 98_A 0.85 0.00
72_F 56_V 0.85 0.00
233_A 103_A 0.85 0.00
240_C 111_K 0.85 0.00
149_T 43_R 0.84 0.00
32_F 64_A 0.84 0.00
38_A 123_H 0.84 0.00
146_N 32_C 0.84 0.00
8_W 6_I 0.84 0.00
46_G 31_D 0.84 0.00
20_V 107_V 0.83 0.00
6_H 84_V 0.83 0.00
266_I 44_I 0.83 0.00
127_I 56_V 0.83 0.00
130_W 133_A 0.83 0.00
125_G 148_Q 0.83 0.00
60_A 62_E 0.83 0.00
183_I 85_E 0.82 0.00
73_N 76_S 0.82 0.00
78_I 27_H 0.82 0.00
272_Y 93_K 0.82 0.00
150_T 69_V 0.82 0.00
80_A 142_M 0.81 0.00
230_L 145_E 0.81 0.00
18_Q 147_V 0.81 0.00
218_P 35_L 0.81 0.00
205_S 32_C 0.81 0.00
186_V 35_L 0.81 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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