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OPENSEQ.org

PAAD - YFAE
UniProt: P76080 - P0ABW3
Length: 249
Sequences: 245
Seq/Len: 1.03
I_Prob: 0.03

PAAD - Putative 1,2-phenylacetyl-CoA epoxidase, subunit D
Paralog alert: 0.02 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: PAAD
YFAE - Uncharacterized ferredoxin-like protein YfaE
Paralog alert: 0.79 [within 20: 0.06] - ratio of genomes with paralogs
Cluster includes: YFAE
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
29_V 27_E 1.51 0.03
62_T 39_E 1.28 0.01
12_V 22_L 1.26 0.01
72_A 82_I 1.24 0.01
125_V 69_I 1.23 0.01
90_A 57_I 1.19 0.01
52_F 48_R 1.16 0.01
73_M 38_R 1.15 0.01
145_A 31_V 1.14 0.01
86_Q 36_Q 1.12 0.01
161_Y 58_A 1.12 0.01
138_I 75_R 1.09 0.01
85_L 38_R 1.09 0.01
129_R 57_I 1.07 0.01
69_I 27_E 1.06 0.01
48_W 39_E 1.06 0.01
101_R 53_Q 1.06 0.01
142_G 79_D 1.05 0.01
94_D 59_E 1.04 0.01
164_C 58_A 1.02 0.01
27_I 27_E 1.00 0.01
52_F 71_P 1.00 0.01
19_L 30_N 0.98 0.01
83_V 75_R 0.97 0.01
143_S 62_A 0.97 0.01
136_T 66_P 0.96 0.01
78_F 65_Q 0.96 0.01
30_L 26_L 0.96 0.01
123_P 5_T 0.95 0.01
20_S 78_G 0.95 0.01
79_T 22_L 0.95 0.01
34_D 17_D 0.94 0.01
87_L 78_G 0.94 0.01
138_I 80_I 0.94 0.01
109_I 49_L 0.93 0.01
75_T 78_G 0.92 0.01
164_C 43_G 0.92 0.01
52_F 68_E 0.91 0.01
34_D 47_T 0.90 0.00
31_T 55_D 0.88 0.00
15_I 35_Y 0.87 0.00
66_I 36_Q 0.87 0.00
18_L 62_A 0.87 0.00
98_P 21_S 0.86 0.00
76_N 33_V 0.86 0.00
153_D 68_E 0.85 0.00
98_P 6_L 0.85 0.00
50_I 20_P 0.85 0.00
21_Q 31_V 0.84 0.00
52_F 39_E 0.84 0.00
93_T 78_G 0.83 0.00
145_A 39_E 0.83 0.00
23_P 21_S 0.83 0.00
160_D 27_E 0.83 0.00
51_G 36_Q 0.83 0.00
79_T 65_Q 0.83 0.00
32_I 82_I 0.82 0.00
145_A 33_V 0.82 0.00
87_L 32_A 0.82 0.00
23_P 77_K 0.82 0.00
147_K 21_S 0.81 0.00
100_A 25_A 0.81 0.00
11_Q 46_R 0.81 0.00
78_F 80_I 0.80 0.00
88_D 17_D 0.80 0.00
160_D 20_P 0.80 0.00
137_L 31_V 0.79 0.00
145_A 24_A 0.79 0.00
120_H 41_Y 0.79 0.00
14_E 53_Q 0.79 0.00
18_L 35_Y 0.78 0.00
102_E 64_I 0.78 0.00
149_L 30_N 0.78 0.00
57_S 33_V 0.78 0.00
72_A 51_A 0.78 0.00
85_L 33_V 0.78 0.00
95_W 64_I 0.78 0.00
110_S 27_E 0.77 0.00
150_Y 43_G 0.77 0.00
138_I 79_D 0.77 0.00
65_L 43_G 0.77 0.00
21_Q 68_E 0.77 0.00
32_I 27_E 0.76 0.00
154_S 71_P 0.76 0.00
40_N 53_Q 0.76 0.00
87_L 38_R 0.76 0.00
86_Q 12_Q 0.76 0.00
160_D 62_A 0.76 0.00
68_A 36_Q 0.76 0.00
42_T 47_T 0.75 0.00
97_T 17_D 0.75 0.00
31_T 41_Y 0.75 0.00
42_T 19_H 0.75 0.00
88_D 55_D 0.75 0.00
96_M 77_K 0.75 0.00
34_D 26_L 0.75 0.00
75_T 65_Q 0.74 0.00
139_S 13_L 0.74 0.00
73_M 79_D 0.74 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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