May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

SUCP - YCJP
UniProt: P76041 - P77716
Length: 839
Sequences: 788
Seq/Len: 1.02
I_Prob: 0.00

SUCP - Putative sucrose phosphorylase
Paralog alert: 0.64 [within 20: 0.13] - ratio of genomes with paralogs
Cluster includes: AMY2 GLGX MALZ SUCP TREC
YCJP - Inner membrane ABC transporter permease protein YcjP
Paralog alert: 0.96 [within 20: 0.84] - ratio of genomes with paralogs
Cluster includes: CYST CYSW MALG MODB POTB POTC POTH POTI PSTA PSTC UGPA UGPE YCJO YCJP YDCU YDCV
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
119_L 74_F 0.97 0.00
156_I 260_I 0.94 0.00
117_Q 32_L 0.92 0.00
527_V 182_N 0.92 0.00
81_F 182_N 0.85 0.00
84_V 36_F 0.85 0.00
461_D 175_A 0.83 0.00
316_A 86_V 0.78 0.00
221_K 267_R 0.78 0.00
53_T 87_V 0.76 0.00
507_S 96_A 0.75 0.00
477_I 178_M 0.74 0.00
427_L 175_A 0.74 0.00
63_L 261_M 0.73 0.00
125_L 160_M 0.73 0.00
136_A 178_M 0.72 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 1.3751 seconds.