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OPENSEQ.org

RLUE - XERD
UniProt: P75966 - P0A8P8
Length: 515
Sequences: 448
Seq/Len: 0.96
I_Prob: 0.00

RLUE - Ribosomal large subunit pseudouridine synthase E
Paralog alert: 0.45 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RLUA RLUB RLUC RLUD RLUE RLUF RSUA TRUC
XERD - Tyrosine recombinase XerD
Paralog alert: 0.88 [within 20: 0.26] - ratio of genomes with paralogs
Cluster includes: FIMB FIME INTA INTB INTD INTE INTF INTQ INTR INTS INTZ XERC XERD
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
93_A 27_N 1.34 0.00
166_S 160_I 1.25 0.00
208_A 160_I 1.17 0.00
129_V 189_L 1.08 0.00
212_W 242_S 1.05 0.00
99_T 113_L 1.03 0.00
129_V 241_L 1.02 0.00
42_I 39_W 1.00 0.00
113_V 267_L 1.00 0.00
67_I 26_L 0.99 0.00
212_W 10_Q 0.98 0.00
103_K 176_E 0.97 0.00
82_S 100_L 0.95 0.00
129_V 91_F 0.94 0.00
120_D 100_L 0.94 0.00
43_L 186_V 0.94 0.00
203_S 137_A 0.94 0.00
177_N 60_A 0.92 0.00
67_I 86_L 0.92 0.00
110_Y 136_K 0.91 0.00
168_L 152_L 0.90 0.00
204_L 90_K 0.90 0.00
69_V 219_T 0.90 0.00
99_T 70_T 0.90 0.00
189_F 216_Q 0.89 0.00
123_E 23_E 0.89 0.00
71_G 135_D 0.89 0.00
80_R 76_L 0.88 0.00
50_V 21_L 0.88 0.00
181_R 31_R 0.87 0.00
168_L 169_V 0.87 0.00
63_L 186_V 0.87 0.00
201_D 179_V 0.87 0.00
207_L 144_A 0.87 0.00
53_Q 176_E 0.86 0.00
204_L 242_S 0.85 0.00
132_N 168_R 0.85 0.00
126_R 15_L 0.85 0.00
207_L 141_V 0.84 0.00
144_V 267_L 0.84 0.00
184_T 241_L 0.84 0.00
97_R 98_A 0.84 0.00
186_H 202_N 0.84 0.00
88_L 122_L 0.83 0.00
86_L 189_L 0.83 0.00
178_R 75_L 0.83 0.00
121_A 55_L 0.82 0.00
83_E 188_W 0.82 0.00
122_L 227_I 0.82 0.00
67_I 16_W 0.81 0.00
169_K 117_Q 0.81 0.00
66_F 113_L 0.81 0.00
135_P 179_V 0.81 0.00
176_R 292_Q 0.80 0.00
172_L 117_Q 0.80 0.00
137_L 79_V 0.80 0.00
206_N 61_E 0.80 0.00
90_N 212_S 0.79 0.00
138_P 273_L 0.79 0.00
112_Q 291_H 0.79 0.00
88_L 150_S 0.78 0.00
39_T 11_F 0.78 0.00
89_T 236_I 0.78 0.00
87_V 209_L 0.78 0.00
171_T 271_S 0.78 0.00
43_L 285_E 0.77 0.00
197_Y 161_S 0.77 0.00
211_E 27_N 0.77 0.00
117_P 11_F 0.77 0.00
136_T 291_H 0.77 0.00
124_A 93_E 0.76 0.00
202_Y 50_A 0.76 0.00
70_Q 245_V 0.76 0.00
142_E 236_I 0.76 0.00
52_P 208_V 0.76 0.00
72_V 295_H 0.76 0.00
57_E 166_V 0.75 0.00
168_L 153_V 0.75 0.00
85_L 90_K 0.75 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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