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OPENSEQ.org

HDA - PUR3
UniProt: P69931 - P08179
Length: 445
Sequences: 295
Seq/Len: 0.67
I_Prob: 0.00

HDA - DnaA regulatory inactivator Hda
Paralog alert: 0.41 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: HDA
PUR3 - Phosphoribosylglycinamide formyltransferase
Paralog alert: 0.62 [within 20: 0.02] - ratio of genomes with paralogs
Cluster includes: FMT PUR3
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
192_F 65_E 1.41 0.00
57_S 191_M 1.41 0.00
57_S 115_Y 1.28 0.00
34_L 3_I 1.15 0.00
222_L 31_R 1.14 0.00
30_L 116_P 1.14 0.00
220_R 76_D 1.07 0.00
79_L 80_P 1.06 0.00
162_L 54_H 1.05 0.00
30_L 27_K 1.02 0.00
121_Y 78_Y 1.01 0.00
118_F 2_N 0.99 0.00
60_L 183_W 0.98 0.00
107_I 115_Y 0.97 0.00
91_D 125_L 0.97 0.00
207_T 163_D 0.97 0.00
20_A 100_Y 0.97 0.00
227_V 154_V 0.96 0.00
107_I 156_V 0.95 0.00
207_T 129_D 0.94 0.00
183_F 38_A 0.94 0.00
120_L 125_L 0.93 0.00
57_S 179_L 0.93 0.00
57_S 162_E 0.93 0.00
52_E 75_I 0.92 0.00
25_G 63_S 0.92 0.00
15_D 81_D 0.92 0.00
22_F 170_Q 0.92 0.00
182_G 148_V 0.92 0.00
220_R 161_S 0.92 0.00
39_R 123_Q 0.91 0.00
119_D 165_I 0.91 0.00
18_T 196_A 0.91 0.00
62_A 84_V 0.90 0.00
127_S 119_H 0.90 0.00
194_L 15_Q 0.90 0.00
44_G 5_V 0.89 0.00
70_R 38_A 0.88 0.00
133_L 177_Y 0.88 0.00
186_P 58_A 0.88 0.00
120_L 18_I 0.88 0.00
230_I 56_L 0.87 0.00
27_N 6_L 0.87 0.00
57_S 102_G 0.87 0.00
23_W 180_V 0.86 0.00
28_S 74_E 0.86 0.00
12_Y 63_S 0.86 0.00
193_L 168_R 0.86 0.00
220_R 71_L 0.86 0.00
119_D 7_I 0.86 0.00
87_P 135_S 0.86 0.00
134_I 2_N 0.86 0.00
14_P 58_A 0.85 0.00
214_A 49_A 0.85 0.00
21_S 180_V 0.85 0.00
114_E 95_A 0.85 0.00
119_D 42_G 0.85 0.00
132_L 80_P 0.85 0.00
61_H 181_I 0.84 0.00
193_L 72_I 0.84 0.00
167_D 7_I 0.82 0.00
225_P 188_R 0.82 0.00
174_L 70_E 0.81 0.00
221_K 176_I 0.81 0.00
172_Q 185_A 0.81 0.00
21_S 135_S 0.80 0.00
118_F 143_L 0.80 0.00
158_Q 67_Y 0.80 0.00
120_L 132_H 0.80 0.00
135_T 34_F 0.79 0.00
48_L 29_T 0.79 0.00
218_A 14_L 0.79 0.00
57_S 163_D 0.79 0.00
220_R 64_R 0.79 0.00
198_D 116_P 0.79 0.00
173_A 4_V 0.79 0.00
83_T 70_E 0.79 0.00
214_A 105_L 0.79 0.00
136_G 116_P 0.78 0.00
136_G 152_A 0.78 0.00
19_F 84_V 0.78 0.00
180_L 181_I 0.78 0.00
107_I 114_K 0.78 0.00
9_L 120_T 0.78 0.00
38_L 57_I 0.78 0.00
20_A 18_I 0.78 0.00
48_L 124_A 0.78 0.00
56_R 40_A 0.78 0.00
103_N 157_F 0.77 0.00
172_Q 20_A 0.77 0.00
221_K 59_S 0.77 0.00
44_G 161_S 0.77 0.00
15_D 149_I 0.77 0.00
32_A 47_R 0.77 0.00
168_E 39_D 0.77 0.00
164_P 35_S 0.77 0.00
10_P 181_I 0.77 0.00
99_V 80_P 0.77 0.00
158_Q 37_K 0.77 0.00
9_L 140_T 0.77 0.00
172_Q 47_R 0.77 0.00
125_L 103_R 0.76 0.00
223_T 180_V 0.76 0.00
22_F 134_T 0.76 0.00
82_R 88_F 0.76 0.00
169_D 185_A 0.76 0.00
188_D 32_A 0.76 0.00
214_A 140_T 0.76 0.00
77_V 79_A 0.76 0.00
10_P 88_F 0.75 0.00
185_L 135_S 0.75 0.00
57_S 24_N 0.75 0.00
65_A 39_D 0.75 0.00
103_N 127_N 0.75 0.00
194_L 132_H 0.74 0.00
71_G 193_E 0.74 0.00
84_W 166_T 0.74 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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