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IF1 - TRXB
UniProt: P69222 - P0A9P4
Length: 393
Sequences: 270
Seq/Len: 0.70
I_Prob: 0.01

IF1 - Translation initiation factor IF-1
Paralog alert: 0.04 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: IF1
TRXB - Thioredoxin reductase
Paralog alert: 0.93 [within 20: 0.42] - ratio of genomes with paralogs
Cluster includes: DHNA DLDH GSHR HCAD NORW STHA TRXB YKGC
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
1y56A:B:AContact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
13_V 81_I 1.61 0.01
13_V 231_N 1.28 0.01
54_T 289_M 1.21 0.00
68_V 189_K 1.10 0.00
27_E 11_I 1.10 0.00
13_V 98_N 1.04 0.00
13_V 175_I 1.04 0.00
71_S 88_V 1.03 0.00
13_V 229_S 1.02 0.00
12_T 100_D 1.00 0.00
4_E 147_Q 0.98 0.00
65_G 22_A 0.98 0.00
5_D 238_A 0.98 0.00
57_L 33_V 0.97 0.00
32_V 257_L 0.97 0.00
69_F 181_F 0.96 0.00
6_N 264_I 0.96 0.00
33_T 182_R 0.95 0.00
25_E 100_D 0.94 0.00
15_E 129_K 0.93 0.00
52_K 276_Q 0.92 0.00
15_E 35_I 0.92 0.00
43_N 190_R 0.91 0.00
4_E 31_Q 0.90 0.00
68_V 73_A 0.90 0.00
68_V 235_L 0.90 0.00
14_L 61_T 0.89 0.00
56_E 247_S 0.89 0.00
2_A 317_L 0.89 0.00
43_N 60_L 0.87 0.00
63_S 75_K 0.87 0.00
57_L 279_I 0.87 0.00
21_M 100_D 0.86 0.00
52_K 221_V 0.86 0.00
13_V 205_N 0.85 0.00
32_V 255_G 0.85 0.00
64_K 150_A 0.84 0.00
58_T 264_I 0.84 0.00
13_V 316_G 0.83 0.00
14_L 102_G 0.83 0.00
58_T 149_V 0.83 0.00
10_Q 240_L 0.83 0.00
27_E 40_K 0.82 0.00
10_Q 181_F 0.82 0.00
63_S 206_R 0.82 0.00
43_N 207_T 0.81 0.00
14_L 260_E 0.81 0.00
68_V 247_S 0.81 0.00
40_M 162_A 0.81 0.00
34_A 248_P 0.81 0.00
35_H 283_F 0.81 0.00
43_N 203_H 0.80 0.00
57_L 81_I 0.80 0.00
13_V 86_N 0.80 0.00
12_T 95_F 0.79 0.00
12_T 297_I 0.78 0.00
15_E 84_H 0.78 0.00
35_H 220_G 0.78 0.00
13_V 167_N 0.78 0.00
13_V 101_N 0.78 0.00
13_V 102_G 0.78 0.00
72_R 80_I 0.77 0.00
69_F 312_R 0.77 0.00
10_Q 195_V 0.77 0.00
15_E 45_T 0.76 0.00
15_E 10_L 0.76 0.00
6_N 35_I 0.76 0.00
52_K 111_I 0.76 0.00
2_A 162_A 0.75 0.00
72_R 152_I 0.75 0.00
13_V 254_E 0.75 0.00
57_L 10_L 0.74 0.00
34_A 14_S 0.74 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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