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OPENSEQ.org
IF1 - RPOA
UniProt: P69222 - P0A7Z4
Length: 401
Sequences: 596
Seq/Len: 1.56
I_Prob: 0.04
IF1 - Translation initiation factor IF-1
Paralog alert: 0.04 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: IF1 		RPOA - DNA-directed RNA polymerase subunit alpha
Paralog alert: 0.02 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: RPOA
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3h0gCO:KW:GSContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
21_M 267_A 1.36 0.04
13_V 217_I 1.32 0.04
9_M 172_L 1.22 0.03
18_P 193_E 1.19 0.03
52_K 133_L 1.13 0.02
64_K 172_L 1.11 0.02
57_L 177_Y 1.09 0.02
69_F 75_Q 1.08 0.02
11_G 112_A 1.08 0.02
36_I 146_V 1.02 0.02
32_V 147_Q 1.02 0.02
50_G 209_G 1.02 0.01
14_L 186_N 0.99 0.01
15_E 46_I 0.99 0.01
20_T 274_A 0.98 0.01
40_M 303_I 0.97 0.01
6_N 295_L 0.95 0.01
63_S 310_R 0.93 0.01
13_V 285_T 0.92 0.01
18_P 258_D 0.91 0.01
58_T 173_V 0.91 0.01
32_V 69_S 0.91 0.01
43_N 252_I 0.90 0.01
37_S 130_I 0.89 0.01
14_L 59_V 0.89 0.01
47_I 310_R 0.89 0.01
13_V 259_D 0.89 0.01
64_K 123_I 0.89 0.01
28_N 269_C 0.88 0.01
40_M 210_T 0.88 0.01
40_M 181_E 0.88 0.01
46_R 169_G 0.87 0.01
58_T 222_T 0.87 0.01
23_R 205_M 0.86 0.01
33_T 29_E 0.86 0.01
43_N 20_S 0.85 0.01
63_S 92_V 0.85 0.01
40_M 75_Q 0.84 0.01
46_R 95_K 0.84 0.01
42_K 269_C 0.84 0.01
48_L 85_L 0.83 0.01
68_V 283_Q 0.83 0.01
23_R 153_V 0.83 0.01
36_I 100_L 0.82 0.01
40_M 178_S 0.82 0.01
42_K 152_Y 0.82 0.01
9_M 156_S 0.82 0.01
32_V 75_Q 0.81 0.01
35_H 287_V 0.81 0.01
68_V 99_I 0.80 0.01
55_V 107_I 0.80 0.01
58_T 28_L 0.80 0.01
14_L 239_Q 0.79 0.01
46_R 258_D 0.79 0.01
34_A 26_V 0.79 0.01
64_K 12_R 0.79 0.01
52_K 253_L 0.78 0.01
40_M 80_E 0.78 0.01
42_K 203_I 0.78 0.01
27_E 217_I 0.78 0.01
64_K 248_E 0.78 0.01
35_H 94_G 0.78 0.01
16_T 196_T 0.78 0.01
32_V 206_E 0.77 0.01
67_I 131_C 0.77 0.01
65_G 23_H 0.77 0.01
44_Y 23_H 0.77 0.01
63_S 130_I 0.77 0.01
10_Q 119_G 0.77 0.01
15_E 216_A 0.76 0.01
46_R 47_L 0.76 0.01
14_L 136_E 0.76 0.01
31_V 168_I 0.76 0.01
40_M 289_L 0.76 0.01
43_N 14_V 0.75 0.01
18_P 29_E 0.75 0.01
23_R 157_T 0.74 0.01
4_E 279_G 0.74 0.01
58_T 224_L 0.74 0.01
64_K 147_Q 0.74 0.01
12_T 236_D 0.74 0.01
69_F 115_I 0.74 0.01
50_G 231_F 0.74 0.01
18_P 212_D 0.74 0.01
19_N 269_C 0.74 0.01
5_D 295_L 0.74 0.01
27_E 204_E 0.73 0.01
67_I 36_G 0.73 0.01
71_S 16_I 0.73 0.01
63_S 220_A 0.73 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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