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OPENSEQ.org
RL5 - SECY
UniProt: P62399 - P0AGA2
Length: 622
Sequences: 990
Seq/Len: 1.61
I_Prob: 0.14
RL5 - 50S ribosomal protein L5
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RL5 		SECY - Protein translocase subunit SecY
Paralog alert: 0.10 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: SECY
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
12_V 384_I 1.45 0.14
146_V 258_Y 1.25 0.08
136_I 22_R 1.24 0.08
46_D 352_F 1.22 0.07
175_F 68_S 1.14 0.06
71_R 65_N 1.14 0.06
17_M 258_Y 1.11 0.05
24_S 366_I 1.11 0.05
161_K 27_I 1.11 0.05
21_N 126_V 1.09 0.05
36_L 125_L 1.08 0.05
28_V 344_D 1.06 0.04
84_P 347_K 1.05 0.04
65_P 348_K 1.04 0.04
78_K 420_V 1.03 0.04
24_S 349_S 1.01 0.04
79_I 26_V 1.01 0.04
65_P 66_M 1.00 0.04
130_M 264_H 1.00 0.04
111_I 272_A 0.99 0.04
71_R 119_Y 0.98 0.03
88_K 171_L 0.98 0.03
38_M 275_I 0.97 0.03
146_V 158_F 0.96 0.03
16_L 391_M 0.96 0.03
132_V 265_L 0.96 0.03
23_N 306_I 0.95 0.03
40_V 240_G 0.95 0.03
12_V 401_F 0.94 0.03
28_V 406_L 0.94 0.03
20_F 283_I 0.94 0.03
23_N 379_L 0.94 0.03
104_I 183_I 0.92 0.03
98_E 333_T 0.92 0.03
142_D 165_V 0.92 0.03
132_V 366_I 0.91 0.03
105_T 83_M 0.90 0.03
120_K 38_F 0.90 0.03
79_I 386_L 0.90 0.03
46_D 432_A 0.90 0.03
93_G 95_L 0.89 0.02
135_Q 76_S 0.89 0.02
166_G 23_L 0.89 0.02
84_P 311_Q 0.89 0.02
175_F 76_S 0.88 0.02
153_D 97_V 0.88 0.02
156_I 72_L 0.88 0.02
17_M 390_F 0.87 0.02
159_T 384_I 0.87 0.02
104_I 307_S 0.87 0.02
83_Y 358_P 0.87 0.02
47_K 65_N 0.87 0.02
59_A 24_L 0.87 0.02
166_G 68_S 0.87 0.02
167_R 127_L 0.87 0.02
97_W 137_T 0.86 0.02
5_H 416_F 0.86 0.02
16_L 116_I 0.86 0.02
31_V 32_V 0.86 0.02
73_S 255_R 0.86 0.02
112_R 347_K 0.86 0.02
24_S 313_G 0.86 0.02
87_C 337_F 0.86 0.02
34_I 309_Y 0.85 0.02
36_L 134_G 0.85 0.02
175_F 29_A 0.85 0.02
67_I 153_G 0.85 0.02
40_V 46_A 0.85 0.02
102_R 75_A 0.85 0.02
129_S 75_A 0.84 0.02
153_D 75_A 0.84 0.02
56_D 333_T 0.84 0.02
173_F 410_V 0.84 0.02
12_V 226_L 0.84 0.02
61_S 203_I 0.84 0.02
146_V 228_F 0.83 0.02
71_R 178_I 0.83 0.02
66_L 199_L 0.83 0.02
74_V 26_V 0.83 0.02
155_T 347_K 0.83 0.02
117_L 136_A 0.83 0.02
118_S 258_Y 0.83 0.02
19_E 108_E 0.83 0.02
146_V 61_I 0.82 0.02
162_S 224_A 0.82 0.02
87_C 16_L 0.82 0.02
24_S 97_V 0.82 0.02
132_V 378_A 0.82 0.02
178_R 240_G 0.82 0.02
79_I 41_I 0.82 0.02
19_E 321_Y 0.81 0.02
146_V 302_W 0.81 0.02
65_P 432_A 0.81 0.02
174_D 81_G 0.81 0.02
45_A 390_F 0.81 0.02
71_R 60_I 0.81 0.02
35_T 247_N 0.81 0.02
71_R 304_T 0.81 0.02
108_V 94_L 0.81 0.02
5_H 39_I 0.81 0.02
34_I 33_F 0.80 0.02
34_I 39_I 0.80 0.02
51_D 390_F 0.80 0.02
142_D 174_L 0.80 0.02
175_F 127_L 0.80 0.02
135_Q 361_Q 0.80 0.02
179_K 335_L 0.79 0.02
56_D 419_Q 0.79 0.02
164_E 150_I 0.79 0.02
132_V 284_I 0.79 0.02
150_R 373_L 0.79 0.02
106_I 253_Q 0.79 0.02
132_V 282_S 0.79 0.02
178_R 67_F 0.79 0.02
37_N 272_A 0.79 0.02
106_I 340_R 0.78 0.02
152_L 315_P 0.78 0.02
65_P 350_G 0.78 0.02
30_R 113_R 0.78 0.02
128_Y 20_K 0.78 0.02
32_E 189_I 0.78 0.02
5_H 127_L 0.78 0.02
64_K 364_K 0.78 0.01
106_I 194_G 0.78 0.01
112_R 180_E 0.78 0.01
84_P 164_L 0.77 0.01
7_Y 283_I 0.77 0.01
97_W 352_F 0.77 0.01
53_A 428_Q 0.77 0.01
100_F 72_L 0.77 0.01
84_P 81_G 0.77 0.01
27_Q 135_I 0.77 0.01
16_L 203_I 0.77 0.01
129_S 102_L 0.77 0.01
71_R 79_A 0.77 0.01
136_I 87_S 0.77 0.01
102_R 45_D 0.77 0.01
24_S 68_S 0.77 0.01
18_T 229_A 0.77 0.01
167_R 223_V 0.77 0.01
136_I 268_K 0.77 0.01
104_I 190_I 0.77 0.01
76_G 16_L 0.76 0.01
98_E 61_I 0.76 0.01
129_S 426_S 0.76 0.01
35_T 335_L 0.76 0.01
69_K 268_K 0.76 0.01
11_E 370_M 0.76 0.01
135_Q 310_L 0.76 0.01
71_R 363_A 0.76 0.01
172_A 330_F 0.75 0.01
95_R 250_K 0.75 0.01
43_A 23_L 0.75 0.01
87_C 63_M 0.75 0.01
159_T 137_T 0.75 0.01
57_L 256_R 0.75 0.01
24_S 284_I 0.75 0.01
67_I 88_A 0.75 0.01
166_G 55_Q 0.75 0.01
24_S 33_F 0.75 0.01
26_M 38_F 0.75 0.01
12_V 268_K 0.75 0.01
142_D 304_T 0.74 0.01
2_A 240_G 0.74 0.01
49_L 409_V 0.74 0.01
164_E 335_L 0.74 0.01
23_N 41_I 0.74 0.01
36_L 23_L 0.74 0.01
133_R 415_D 0.74 0.01
128_Y 329_C 0.74 0.01
31_V 286_F 0.74 0.01
14_K 28_G 0.74 0.01
12_V 288_A 0.74 0.01
101_E 235_V 0.74 0.01
102_R 430_E 0.74 0.01
101_E 128_A 0.74 0.01
157_T 411_V 0.73 0.01
102_R 235_V 0.73 0.01
103_L 307_S 0.73 0.01
120_K 68_S 0.73 0.01
76_G 62_E 0.73 0.01
79_I 247_N 0.73 0.01
24_S 194_G 0.73 0.01
10_D 304_T 0.73 0.01
24_S 336_V 0.73 0.01
73_S 82_I 0.73 0.01
12_V 44_I 0.73 0.01
153_D 286_F 0.73 0.01
59_A 221_L 0.73 0.01
64_K 289_T 0.72 0.01
10_D 153_G 0.72 0.01
95_R 162_V 0.72 0.01
154_I 125_L 0.72 0.01
51_D 168_T 0.72 0.01
51_D 226_L 0.72 0.01
79_I 162_V 0.72 0.01
50_L 422_T 0.72 0.01
79_I 104_E 0.72 0.01
132_V 232_F 0.72 0.01
53_A 333_T 0.72 0.01
51_D 416_F 0.72 0.01
96_M 177_Q 0.72 0.01
16_L 275_I 0.72 0.01
94_E 243_R 0.72 0.01
5_H 176_E 0.72 0.01
79_I 88_A 0.72 0.01
18_T 363_A 0.71 0.01
69_K 160_A 0.71 0.01
34_I 141_N 0.71 0.01
58_A 197_A 0.71 0.01
64_K 343_A 0.71 0.01
71_R 394_A 0.71 0.01
9_K 189_I 0.71 0.01
102_R 95_L 0.71 0.01
14_K 373_L 0.71 0.01
73_S 420_V 0.71 0.01
51_D 20_K 0.71 0.01
56_D 241_Q 0.71 0.01
94_E 91_I 0.70 0.01
163_D 330_F 0.70 0.01
19_E 139_L 0.70 0.01
133_R 141_N 0.70 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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