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OPENSEQ.org
RL4 - SECY
UniProt: P60723 - P0AGA2
Length: 644
Sequences: 783
Seq/Len: 1.26
I_Prob: 0.00
RL4 - 50S ribosomal protein L4
Paralog alert: 0.06 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RL4 		SECY - Protein translocase subunit SecY
Paralog alert: 0.10 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: SECY
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
183_F 264_H 1.27 0.00
77_I 348_K 1.25 0.00
79_R 351_A 1.18 0.00
48_T 23_L 1.16 0.00
88_R 44_I 1.16 0.00
80_S 87_S 1.15 0.00
127_E 306_I 1.14 0.00
97_N 335_L 1.10 0.00
43_T 351_A 1.09 0.00
188_M 406_L 1.09 0.00
148_I 45_D 1.07 0.00
118_L 386_L 1.05 0.00
121_V 115_K 1.05 0.00
94_Q 76_S 1.05 0.00
166_K 264_H 1.04 0.00
123_K 290_I 1.03 0.00
97_N 432_A 1.03 0.00
116_D 24_L 1.02 0.00
165_H 257_V 1.02 0.00
29_H 40_P 1.00 0.00
186_V 269_V 0.99 0.00
149_I 308_L 0.99 0.00
57_K 418_A 0.98 0.00
150_T 132_S 0.97 0.00
187_V 23_L 0.97 0.00
149_I 129_I 0.97 0.00
98_K 335_L 0.97 0.00
102_R 220_L 0.97 0.00
42_G 78_F 0.97 0.00
19_F 419_Q 0.96 0.00
121_V 27_I 0.94 0.00
150_T 365_Y 0.94 0.00
98_K 356_I 0.94 0.00
121_V 292_S 0.94 0.00
116_D 196_V 0.94 0.00
36_A 243_R 0.94 0.00
86_A 416_F 0.93 0.00
53_T 134_G 0.93 0.00
193_V 291_A 0.92 0.00
75_S 390_F 0.92 0.00
154_D 48_V 0.92 0.00
188_M 39_I 0.92 0.00
115_Q 356_I 0.92 0.00
157_L 249_A 0.91 0.00
160_A 216_H 0.91 0.00
112_L 252_Q 0.91 0.00
135_A 162_V 0.90 0.00
154_D 347_K 0.90 0.00
57_K 129_I 0.90 0.00
52_V 371_T 0.90 0.00
93_S 415_D 0.89 0.00
138_L 66_M 0.89 0.00
97_N 414_M 0.89 0.00
15_S 30_L 0.89 0.00
168_D 81_G 0.89 0.00
125_S 54_E 0.89 0.00
65_T 78_F 0.88 0.00
85_F 72_L 0.88 0.00
188_M 218_L 0.88 0.00
158_F 162_V 0.88 0.00
159_L 363_A 0.88 0.00
61_R 129_I 0.87 0.00
188_M 344_D 0.87 0.00
42_G 36_G 0.87 0.00
100_M 194_G 0.87 0.00
101_Y 124_T 0.87 0.00
12_L 132_S 0.86 0.00
129_P 407_L 0.86 0.00
165_H 275_I 0.86 0.00
31_V 124_T 0.86 0.00
31_V 263_T 0.86 0.00
170_R 39_I 0.85 0.00
142_A 18_E 0.85 0.00
187_V 356_I 0.85 0.00
53_T 168_T 0.84 0.00
44_R 290_I 0.84 0.00
67_R 191_I 0.84 0.00
46_Q 288_A 0.84 0.00
184_D 26_V 0.84 0.00
166_K 356_I 0.84 0.00
64_G 127_L 0.84 0.00
175_I 366_I 0.83 0.00
165_H 387_I 0.83 0.00
95_K 243_R 0.83 0.00
115_Q 320_L 0.83 0.00
197_E 240_G 0.83 0.00
87_A 411_V 0.83 0.00
157_L 231_T 0.83 0.00
15_S 28_G 0.83 0.00
85_F 401_F 0.82 0.00
27_L 190_I 0.82 0.00
192_A 375_L 0.82 0.00
96_V 263_T 0.82 0.00
46_Q 335_L 0.82 0.00
30_Q 223_V 0.82 0.00
86_A 75_A 0.82 0.00
188_M 187_I 0.82 0.00
198_E 39_I 0.82 0.00
142_A 246_V 0.81 0.00
191_D 410_V 0.81 0.00
121_V 440_G 0.81 0.00
80_S 63_M 0.81 0.00
64_G 122_Y 0.81 0.00
196_V 133_I 0.81 0.00
29_H 194_G 0.81 0.00
50_A 360_E 0.81 0.00
53_T 323_S 0.81 0.00
184_D 292_S 0.81 0.00
126_V 22_R 0.81 0.00
102_R 438_L 0.81 0.00
152_E 196_V 0.81 0.00
105_L 103_A 0.81 0.00
151_G 45_D 0.81 0.00
115_Q 364_K 0.80 0.00
61_R 228_F 0.80 0.00
166_K 225_V 0.80 0.00
123_K 170_F 0.80 0.00
141_M 199_L 0.80 0.00
121_V 422_T 0.80 0.00
90_Q 20_K 0.80 0.00
50_A 349_S 0.80 0.00
30_Q 336_V 0.80 0.00
28_V 32_V 0.79 0.00
145_D 288_A 0.79 0.00
88_R 258_Y 0.79 0.00
41_Q 81_G 0.79 0.00
107_S 76_S 0.79 0.00
99_K 276_P 0.79 0.00
122_E 369_V 0.79 0.00
176_D 343_A 0.79 0.00
82_G 28_G 0.79 0.00
193_V 125_L 0.78 0.00
27_L 252_Q 0.78 0.00
119_I 231_T 0.78 0.00
159_L 151_N 0.78 0.00
161_A 150_I 0.78 0.00
57_K 244_I 0.78 0.00
27_L 380_Y 0.78 0.00
194_K 366_I 0.78 0.00
118_L 154_F 0.78 0.00
70_S 341_E 0.78 0.00
75_S 243_R 0.78 0.00
27_L 329_C 0.78 0.00
92_H 81_G 0.78 0.00
118_L 214_D 0.78 0.00
75_S 82_I 0.77 0.00
174_G 125_L 0.77 0.00
200_L 407_L 0.77 0.00
187_V 26_V 0.77 0.00
98_K 64_F 0.77 0.00
92_H 75_A 0.77 0.00
199_M 380_Y 0.77 0.00
187_V 330_F 0.77 0.00
148_I 19_L 0.77 0.00
29_H 271_M 0.76 0.00
60_W 179_T 0.76 0.00
16_E 193_A 0.76 0.00
75_S 424_M 0.76 0.00
53_T 269_V 0.76 0.00
155_E 33_F 0.76 0.00
159_L 95_L 0.76 0.00
17_T 384_I 0.76 0.00
149_I 158_F 0.76 0.00
36_A 114_R 0.75 0.00
112_L 382_T 0.75 0.00
97_N 349_S 0.75 0.00
28_V 405_S 0.75 0.00
123_K 326_I 0.75 0.00
164_L 225_V 0.75 0.00
165_H 162_V 0.75 0.00
84_T 341_E 0.75 0.00
176_D 356_I 0.75 0.00
111_E 63_M 0.75 0.00
77_I 257_V 0.75 0.00
78_W 348_K 0.75 0.00
187_V 390_F 0.75 0.00
84_T 65_N 0.75 0.00
78_W 168_T 0.74 0.00
85_F 243_R 0.74 0.00
187_V 413_I 0.74 0.00
51_E 91_I 0.74 0.00
196_V 108_E 0.74 0.00
31_V 45_D 0.74 0.00
183_F 286_F 0.74 0.00
84_T 418_A 0.74 0.00
93_S 198_G 0.74 0.00
169_V 61_I 0.74 0.00
61_R 172_M 0.74 0.00
29_H 172_M 0.74 0.00
177_P 335_L 0.74 0.00
47_K 43_G 0.74 0.00
108_I 347_K 0.74 0.00
160_A 427_S 0.74 0.00
97_N 106_K 0.73 0.00
85_F 181_R 0.73 0.00
16_E 203_I 0.73 0.00
29_H 366_I 0.73 0.00
105_L 158_F 0.73 0.00
175_I 356_I 0.73 0.00
57_K 207_I 0.73 0.00
159_L 302_W 0.73 0.00
18_T 60_I 0.73 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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