May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

RL24 - SECY
UniProt: P60624 - P0AGA2
Length: 547
Sequences: 846
Seq/Len: 1.59
I_Prob: 0.01

RL24 - 50S ribosomal protein L24
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RL24
SECY - Protein translocase subunit SecY
Paralog alert: 0.10 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: SECY
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
65_I 115_K 1.27 0.01
8_D 273_G 1.23 0.01
19_K 174_L 1.14 0.01
92_K 102_L 1.12 0.01
82_R 22_R 1.12 0.01
81_D 335_L 1.09 0.01
44_K 310_L 1.08 0.01
28_V 105_I 1.05 0.01
69_N 87_S 1.05 0.01
54_Q 380_Y 1.04 0.01
69_N 33_F 1.04 0.01
35_I 320_L 1.03 0.01
6_R 360_E 1.03 0.01
45_H 105_I 1.01 0.01
76_A 257_V 0.99 0.01
35_I 423_L 0.98 0.01
67_V 87_S 0.97 0.01
46_Q 132_S 0.96 0.01
89_D 420_V 0.95 0.01
28_V 72_L 0.94 0.01
103_I 43_G 0.93 0.01
61_K 18_E 0.93 0.01
96_F 335_L 0.93 0.01
47_K 387_I 0.92 0.01
29_L 387_I 0.91 0.01
25_V 307_S 0.91 0.01
8_D 346_L 0.91 0.01
7_R 401_F 0.91 0.01
37_E 176_E 0.90 0.01
25_V 401_F 0.90 0.01
26_K 183_I 0.90 0.01
70_V 22_R 0.90 0.01
97_K 229_A 0.89 0.01
71_A 432_A 0.89 0.01
43_K 194_G 0.89 0.01
55_P 422_T 0.89 0.01
14_L 152_P 0.88 0.01
93_V 82_I 0.88 0.01
80_A 222_L 0.88 0.01
26_K 297_G 0.88 0.01
89_D 233_F 0.88 0.01
64_A 78_F 0.87 0.01
44_K 128_A 0.87 0.01
64_A 38_F 0.87 0.01
24_K 226_L 0.87 0.01
33_K 49_L 0.87 0.01
59_V 386_L 0.86 0.00
34_V 22_R 0.86 0.00
65_I 366_I 0.86 0.00
90_G 130_F 0.86 0.00
89_D 151_N 0.86 0.00
10_E 240_G 0.86 0.00
91_K 60_I 0.86 0.00
14_L 335_L 0.85 0.00
32_G 306_I 0.85 0.00
78_G 159_T 0.85 0.00
30_S 45_D 0.84 0.00
82_R 20_K 0.84 0.00
4_K 261_Q 0.84 0.00
80_A 321_Y 0.84 0.00
86_R 87_S 0.83 0.00
41_L 386_L 0.83 0.00
14_L 222_L 0.82 0.00
104_K 380_Y 0.82 0.00
59_V 170_F 0.82 0.00
81_D 351_A 0.82 0.00
33_K 130_F 0.82 0.00
5_I 271_M 0.82 0.00
44_K 351_A 0.81 0.00
76_A 231_T 0.81 0.00
25_V 285_L 0.81 0.00
78_G 425_M 0.81 0.00
83_V 174_L 0.80 0.00
30_S 28_G 0.80 0.00
37_E 311_Q 0.80 0.00
49_V 351_A 0.80 0.00
71_A 20_K 0.80 0.00
24_K 246_V 0.80 0.00
49_V 416_F 0.80 0.00
70_V 158_F 0.80 0.00
5_I 380_Y 0.80 0.00
6_R 148_L 0.80 0.00
59_V 128_A 0.80 0.00
12_I 407_L 0.80 0.00
70_V 180_E 0.80 0.00
4_K 375_L 0.80 0.00
47_K 225_V 0.80 0.00
78_G 269_V 0.80 0.00
6_R 264_H 0.79 0.00
31_S 23_L 0.79 0.00
82_R 110_E 0.78 0.00
71_A 238_E 0.78 0.00
5_I 230_V 0.78 0.00
49_V 61_I 0.78 0.00
47_K 244_I 0.77 0.00
63_A 125_L 0.77 0.00
55_P 380_Y 0.77 0.00
101_E 252_Q 0.77 0.00
6_R 77_I 0.77 0.00
59_V 164_L 0.77 0.00
80_A 228_F 0.77 0.00
101_E 22_R 0.77 0.00
96_F 189_I 0.77 0.00
41_L 130_F 0.76 0.00
45_H 88_A 0.76 0.00
6_R 228_F 0.76 0.00
60_E 154_F 0.76 0.00
80_A 28_G 0.76 0.00
35_I 390_F 0.76 0.00
30_S 190_I 0.76 0.00
7_R 418_A 0.76 0.00
4_K 350_G 0.76 0.00
103_I 130_F 0.76 0.00
27_N 82_I 0.76 0.00
97_K 127_L 0.76 0.00
15_T 392_R 0.76 0.00
90_G 343_A 0.76 0.00
26_K 49_L 0.75 0.00
48_P 405_S 0.75 0.00
48_P 353_V 0.75 0.00
32_G 324_A 0.75 0.00
81_D 411_V 0.75 0.00
48_P 168_T 0.75 0.00
98_S 106_K 0.75 0.00
95_F 272_A 0.75 0.00
99_N 45_D 0.75 0.00
41_L 196_V 0.75 0.00
15_T 63_M 0.75 0.00
43_K 317_Y 0.75 0.00
82_R 374_T 0.75 0.00
75_A 364_K 0.75 0.00
8_D 269_V 0.75 0.00
55_P 424_M 0.75 0.00
82_R 148_L 0.74 0.00
85_F 236_F 0.74 0.00
84_G 356_I 0.74 0.00
50_P 116_I 0.74 0.00
21_K 82_I 0.74 0.00
51_A 37_S 0.74 0.00
66_Q 118_Q 0.74 0.00
7_R 214_D 0.74 0.00
64_A 310_L 0.74 0.00
103_I 96_T 0.74 0.00
77_T 102_L 0.74 0.00
27_N 102_L 0.73 0.00
27_N 151_N 0.73 0.00
89_D 51_K 0.73 0.00
66_Q 71_A 0.73 0.00
7_R 219_V 0.73 0.00
49_V 192_F 0.73 0.00
2_A 432_A 0.73 0.00
47_K 66_M 0.73 0.00
25_V 24_L 0.73 0.00
50_P 409_V 0.73 0.00
10_E 246_V 0.73 0.00
51_A 235_V 0.73 0.00
31_S 391_M 0.73 0.00
19_K 130_F 0.72 0.00
83_V 141_N 0.72 0.00
32_G 218_L 0.72 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.7827 seconds.