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OPENSEQ.org
L28 - S06
UniProt: P60494 - Q5SLP8
Length: 199
Sequences: 1070
Seq/Len: 6.61
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cF 3v2d1 3v2eF 3v2f1Contact Map
2j002j00F 2j011 2j02F 2j031Contact Map
4juw4juwF 4jux1Contact Map
4kix4kixX 4kiyF 4kizX 4kj0F 4kj1X 4kj2F 4kj3X 4kj4FContact Map
4kj54kj5X 4kj6F 4kj7X 4kj8F 4kj9X 4kjaF 4kjbX 4kjcFContact Map
3uyd3uydI 3uyeZ 3uyfI 3uygZContact Map
4gd13r8sX 3r8tX 4gd1F 4gd2FContact Map
3ohc3ohcF 3ohdF 3ohj1 3ohk1Contact Map
3knh3knhF 3kni1 3knjF 3knk1Contact Map
3f1e3f1eF 3f1f1 3f1gF 3f1h1Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
46_L 85_V 0.86 0.00
74_V 57_Q 0.83 0.00
65_S 91_V 0.81 0.00
60_F 24_E 0.80 0.00
69_K 91_V 0.78 0.00
36_G 52_I 0.74 0.00
64_A 27_Q 0.73 0.00
59_T 80_R 0.73 0.00
42_Q 15_D 0.72 0.00
74_V 15_D 0.71 0.00
5_C 7_N 0.71 0.00
11_R 12_P 0.70 0.00
64_A 72_V 0.69 0.00
64_A 89_M 0.69 0.00
14_V 30_L 0.68 0.00
50_R 3_R 0.68 0.00
66_H 6_V 0.68 0.00
35_T 76_A 0.67 0.00
2_S 88_V 0.67 0.00
38_S 79_L 0.67 0.00
74_V 87_R 0.66 0.00
47_Q 77_R 0.66 0.00
47_Q 27_Q 0.66 0.00
46_L 30_L 0.65 0.00
55_G 34_G 0.64 0.00
11_R 28_R 0.63 0.00
14_V 37_V 0.62 0.00
44_P 59_Y 0.61 0.00
47_Q 79_L 0.61 0.00
60_F 18_Q 0.61 0.00
9_G 66_E 0.61 0.00
68_P 8_I 0.61 0.00
4_V 34_G 0.59 0.00
60_F 26_I 0.59 0.00
51_V 26_I 0.59 0.00
73_L 46_R 0.59 0.00
14_V 23_K 0.59 0.00
60_F 60_F 0.59 0.00
18_I 75_L 0.59 0.00
62_V 68_P 0.58 0.00
68_P 21_L 0.58 0.00
66_H 8_I 0.58 0.00
51_V 10_L 0.58 0.00
62_V 33_Y 0.58 0.00
9_G 36_R 0.58 0.00
65_S 75_L 0.57 0.00
67_I 56_P 0.57 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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