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OPENSEQ.org
L28 - S08
UniProt: P60494 - Q5SHQ2
Length: 236
Sequences: 1000
Seq/Len: 5.16
I_Prob: 0.03
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cH 3v2d1 3v2eH 3v2f1Contact Map
2j002j00H 2j011 2j02H 2j031Contact Map
4juw4juwH 4jux1Contact Map
4kix4kixX 4kiyH 4kizX 4kj0H 4kj1X 4kj2H 4kj3X 4kj4HContact Map
4kj54kj5X 4kj6H 4kj7X 4kj8H 4kj9X 4kjaH 4kjbX 4kjcHContact Map
3uyd3uydK 3uyeZ 3uyfK 3uygZContact Map
4gd13r8sX 3r8tX 4gd1H 4gd2HContact Map
3knh3knhH 3kni1 3knjH 3knk1Contact Map
3ohc3ohcH 3ohdH 3ohj1 3ohk1Contact Map
3ohy3ohyH 3ohz1 3oi0H 3oi11Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
47_Q 40_A 1.01 0.03
42_Q 61_V 1.00 0.03
50_R 47_G 0.98 0.03
68_P 104_R 0.86 0.02
46_L 105_R 0.86 0.02
7_I 2_L 0.77 0.01
17_S 9_M 0.76 0.01
59_T 75_R 0.73 0.01
2_S 115_S 0.70 0.01
47_Q 121_D 0.68 0.01
65_S 123_E 0.68 0.01
18_I 3_T 0.67 0.01
11_R 52_D 0.67 0.01
44_P 76_P 0.67 0.01
18_I 96_G 0.67 0.01
11_R 47_G 0.67 0.01
58_I 77_E 0.66 0.01
10_K 11_T 0.66 0.01
12_P 100_I 0.64 0.01
57_E 3_T 0.64 0.01
14_V 129_V 0.63 0.01
13_I 134_I 0.61 0.01
35_T 10_L 0.61 0.01
21_R 10_L 0.60 0.01
7_I 127_L 0.60 0.01
53_V 91_R 0.60 0.01
51_V 13_I 0.60 0.01
46_L 9_M 0.59 0.01
5_C 93_V 0.59 0.01
73_L 123_E 0.59 0.01
46_L 18_R 0.59 0.01
40_R 30_R 0.59 0.01
65_S 21_K 0.59 0.01
62_V 47_G 0.59 0.01
12_P 104_R 0.59 0.01
2_S 13_I 0.59 0.01
48_K 118_V 0.59 0.01
7_I 104_R 0.58 0.01
35_T 79_V 0.58 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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