May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
L27 - S17
UniProt: P60493 - Q5SHP7
Length: 190
Sequences: 1248
Seq/Len: 7.52
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cQ 3v2d0 3v2eQ 3v2f0Contact Map
2j002j00Q 2j010 2j02Q 2j030Contact Map
4juw4juwQ 4jux0Contact Map
4kix4kixW 4kiyQ 4kizW 4kj0Q 4kj1W 4kj2Q 4kj3W 4kj4QContact Map
4kj54kj5W 4kj6Q 4kj7W 4kj8Q 4kj9W 4kjaQ 4kjbW 4kjcQContact Map
3uyd3uydT 3uye3 3uyfT 3uyg3Contact Map
4gd13r8sW 3r8tW 4gd1Q 4gd2QContact Map
3ohc3ohcQ 3ohdQ 3ohj0 3ohk0Contact Map
3knh3knhQ 3kni0 3knjQ 3knk0Contact Map
3f1e3f1eQ 3f1f0 3f1gQ 3f1h0Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
6_G 6_L 0.83 0.00
79_V 54_G 0.79 0.00
77_R 33_G 0.78 0.00
1_M 35_V 0.74 0.00
46_K 55_D 0.74 0.00
11_R 26_Q 0.68 0.00
7_L 6_L 0.68 0.00
47_P 61_E 0.68 0.00
60_F 14_K 0.67 0.00
53_M 30_P 0.66 0.00
8_G 9_V 0.65 0.00
77_R 15_M 0.64 0.00
44_R 60_I 0.63 0.00
55_R 25_R 0.62 0.00
32_R 30_P 0.57 0.00
10_T 70_R 0.57 0.00
27_E 35_V 0.57 0.00
74_R 4_K 0.56 0.00
11_R 59_I 0.56 0.00
72_R 31_L 0.55 0.00
5_K 35_V 0.55 0.00
35_N 67_K 0.54 0.00
29_Q 7_T 0.54 0.00
8_G 30_P 0.54 0.00
3_H 6_L 0.53 0.00
78_Y 74_L 0.53 0.00
84_L 44_A 0.53 0.00
10_T 7_T 0.52 0.00
10_T 60_I 0.52 0.00
57_F 18_T 0.51 0.00
80_H 50_K 0.51 0.00
44_R 48_E 0.51 0.00
78_Y 67_K 0.51 0.00
50_N 66_S 0.51 0.00
83_P 48_E 0.51 0.00
7_L 31_L 0.50 0.00
57_F 70_R 0.50 0.00
59_L 80_G 0.50 0.00
57_F 44_A 0.50 0.00
83_P 58_E 0.50 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.7132 seconds.