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OPENSEQ.org
L27 - S04
UniProt: P60493 - P80373
Length: 294
Sequences: 1178
Seq/Len: 4.03
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cD 3v2d0 3v2eD 3v2f0Contact Map
2j002j00D 2j010 2j02D 2j030Contact Map
4juw4juwD 4jux0Contact Map
4kix4kixW 4kiyD 4kizW 4kj0D 4kj1W 4kj2D 4kj3W 4kj4DContact Map
4kj54kj5W 4kj6D 4kj7W 4kj8D 4kj9W 4kjaD 4kjbW 4kjcDContact Map
3uyd3uydG 3uye3 3uyfG 3uyg3Contact Map
4gd13r8sW 3r8tW 4gd1D 4gd2DContact Map
3ohc3ohcD 3ohdD 3ohj0 3ohk0Contact Map
3knh3knhD 3kni0 3knjD 3knk0Contact Map
3f1e3f1eD 3f1f0 3f1gD 3f1h0Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
31_V 19_L 0.98 0.01
3_H 209_R 0.93 0.01
81_V 138_Y 0.78 0.01
6_G 200_E 0.77 0.01
62_L 57_R 0.74 0.01
69_F 104_V 0.72 0.01
68_E 77_N 0.70 0.01
64_D 117_A 0.70 0.01
10_T 10_R 0.67 0.01
25_R 111_A 0.67 0.01
83_P 135_L 0.66 0.01
6_G 60_E 0.66 0.01
37_L 13_R 0.66 0.01
29_Q 114_R 0.65 0.01
1_M 53_D 0.64 0.01
51_V 73_R 0.62 0.00
19_K 85_K 0.62 0.00
1_M 173_W 0.62 0.00
62_L 145_E 0.62 0.00
61_A 77_N 0.61 0.00
6_G 88_V 0.61 0.00
27_E 201_Q 0.61 0.00
29_Q 76_R 0.60 0.00
83_P 150_E 0.60 0.00
6_G 191_R 0.60 0.00
19_K 157_L 0.59 0.00
79_V 2_G 0.58 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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