May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
L27 - L32
UniProt: P60493 - P80339
Length: 145
Sequences: 892
Seq/Len: 6.33
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2d05 3v2f05Contact Map
2j002j0105 2j0305Contact Map
4juw4jux05Contact Map
4kix4kixW0 4kizW0 4kj1W0 4kj3W0Contact Map
4kj54kj5W0 4kj7W0 4kj9W0 4kjbW0Contact Map
2zjr2zjrTZContact Map
4btc4btd05Contact Map
3uyd3uye35 3uyg35Contact Map
3v223v2305 3v2505Contact Map
4gd13r8sW0 3r8tW0Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
3_H 23_H 0.88 0.01
3_H 8_K 0.83 0.01
74_R 10_K 0.83 0.01
78_Y 58_L 0.82 0.01
46_K 22_H 0.80 0.00
46_K 4_H 0.79 0.00
46_K 21_S 0.78 0.00
45_F 6_V 0.74 0.00
60_F 42_P 0.72 0.00
30_V 29_T 0.70 0.00
69_F 8_K 0.69 0.00
55_R 15_R 0.66 0.00
58_T 45_V 0.66 0.00
70_Q 13_K 0.65 0.00
63_V 59_E 0.65 0.00
32_R 30_L 0.64 0.00
6_G 9_K 0.61 0.00
30_V 27_P 0.60 0.00
66_V 51_Y 0.59 0.00
76_G 5_P 0.59 0.00
10_T 37_K 0.57 0.00
28_G 19_R 0.57 0.00
1_M 43_H 0.56 0.00
11_R 44_T 0.56 0.00
44_R 57_V 0.56 0.00
84_L 32_P 0.56 0.00
28_G 26_T 0.56 0.00
8_G 22_H 0.55 0.00
80_H 39_M 0.55 0.00
52_G 55_R 0.55 0.00
13_G 4_H 0.54 0.00
8_G 15_R 0.54 0.00
47_P 16_R 0.54 0.00
66_V 56_K 0.54 0.00
38_V 16_R 0.54 0.00
73_G 25_L 0.53 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 2.522 seconds.