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OPENSEQ.org
L27 - S07
UniProt: P60493 - P17291
Length: 241
Sequences: 1134
Seq/Len: 4.72
I_Prob: 0.02
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cG 3v2d0 3v2eG 3v2f0Contact Map
2j002j00G 2j010 2j02G 2j030Contact Map
4juw4juwG 4jux0Contact Map
4kix4kixW 4kiyG 4kizW 4kj0G 4kj1W 4kj2G 4kj3W 4kj4GContact Map
4kj54kj5W 4kj6G 4kj7W 4kj8G 4kj9W 4kjaG 4kjbW 4kjcGContact Map
3uyd3uydJ 3uye3 3uyfJ 3uyg3Contact Map
4gd13r8sW 3r8tW 4gd1G 4gd2GContact Map
3knh3knhG 3kni0 3knjG 3knk0Contact Map
3ohc3ohcG 3ohdG 3ohj0 3ohk0Contact Map
3ohy3ohyG 3ohz0 3oi0G 3oi10Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
11_R 40_A 0.99 0.02
11_R 115_R 0.93 0.02
10_T 106_Q 0.92 0.02
6_G 131_K 0.82 0.01
73_G 134_A 0.81 0.01
7_L 96_Q 0.81 0.01
62_L 149_R 0.79 0.01
35_N 84_N 0.77 0.01
6_G 137_K 0.75 0.01
3_H 122_H 0.75 0.01
73_G 6_R 0.75 0.01
6_G 114_R 0.74 0.01
11_R 138_K 0.73 0.01
38_V 32_R 0.73 0.01
41_R 78_R 0.72 0.01
78_Y 25_A 0.71 0.01
19_K 41_R 0.70 0.01
11_R 149_R 0.67 0.01
29_Q 9_V 0.67 0.01
1_M 77_S 0.67 0.01
49_K 49_I 0.66 0.01
78_Y 21_V 0.66 0.01
19_K 30_I 0.65 0.01
53_M 135_V 0.65 0.01
73_G 76_R 0.65 0.01
8_G 4_R 0.65 0.01
35_N 154_Y 0.64 0.01
66_V 59_L 0.64 0.01
55_R 5_R 0.64 0.01
84_L 32_R 0.64 0.01
59_L 47_C 0.63 0.01
38_V 116_A 0.63 0.01
57_F 17_V 0.62 0.01
81_V 17_V 0.62 0.01
30_V 48_K 0.61 0.01
6_G 118_V 0.61 0.01
76_G 110_Q 0.61 0.01
19_K 108_A 0.61 0.01
20_R 76_R 0.60 0.01
31_V 97_Q 0.60 0.01
11_R 37_N 0.60 0.01
52_G 155_R 0.60 0.01
76_G 43_F 0.60 0.01
4_K 149_R 0.60 0.01
58_T 155_R 0.59 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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