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OPENSEQ.org

L21 - S16
UniProt: P60492 - Q5SJH3
Length: 189
Sequences: 1310
Seq/Len: 7.04
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cP 3v2dV 3v2eP 3v2fVContact Map
2j002j00P 2j01V 2j02P 2j03VContact Map
4juw4juwP 4juxVContact Map
4kix4kixR 4kiyP 4kizR 4kj0P 4kj1R 4kj2P 4kj3R 4kj4PContact Map
4kj54kj5R 4kj6P 4kj7R 4kj8P 4kj9R 4kjaP 4kjbR 4kjcPContact Map
3uyd3uydS 3uye2 3uyfS 3uyg2Contact Map
4gd13r8sR 3r8tR 4gd1P 4gd2PContact Map
3knh3knhP 3kniV 3knjP 3knkVContact Map
3ohc3ohcP 3ohdP 3ohjV 3ohkVContact Map
3f1e3f1eP 3f1fV 3f1gP 3f1hVContact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
72_V 1_M 0.83 0.00
101_G 60_L 0.72 0.00
27_A 77_A 0.69 0.00
84_K 60_L 0.69 0.00
12_Y 15_P 0.66 0.00
70_I 77_A 0.64 0.00
78_K 35_K 0.63 0.00
13_R 41_P 0.61 0.00
79_V 42_R 0.60 0.00
35_L 27_K 0.59 0.00
84_K 29_D 0.59 0.00
4_I 9_F 0.58 0.00
23_E 22_T 0.58 0.00
55_A 3_K 0.58 0.00
10_K 13_H 0.56 0.00
4_I 42_R 0.54 0.00
80_Q 40_D 0.52 0.00
96_I 26_R 0.51 0.00
48_G 69_T 0.51 0.00
71_L 29_D 0.51 0.00
52_V 27_K 0.50 0.00
82_R 20_V 0.50 0.00
49_T 58_Y 0.48 0.00
61_V 25_R 0.48 0.00
13_R 82_Q 0.47 0.00
73_S 22_T 0.47 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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