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OPENSEQ.org
L21 - S05
UniProt: P60492 - Q5SHQ5
Length: 263
Sequences: 1121
Seq/Len: 4.34
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cE 3v2dV 3v2eE 3v2fVContact Map
2j002j00E 2j01V 2j02E 2j03VContact Map
4juw4juwE 4juxVContact Map
4kix4kixR 4kiyE 4kizR 4kj0E 4kj1R 4kj2E 4kj3R 4kj4EContact Map
4kj54kj5R 4kj6E 4kj7R 4kj8E 4kj9R 4kjaE 4kjbR 4kjcEContact Map
3uyd3uydH 3uye2 3uyfH 3uyg2Contact Map
4gd13r8sR 3r8tR 4gd1E 4gd2EContact Map
3knh3knhE 3kniV 3knjE 3knkVContact Map
3ohc3ohcE 3ohdE 3ohjV 3ohkVContact Map
3f1e3f1eE 3f1fV 3f1gE 3f1hVContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
73_S 129_I 0.97 0.01
7_T 87_S 0.87 0.01
61_V 157_H 0.82 0.01
2_F 100_V 0.81 0.01
75_F 53_L 0.79 0.01
64_H 13_I 0.77 0.01
12_Y 127_N 0.76 0.01
66_R 48_A 0.76 0.01
6_K 117_D 0.75 0.01
72_V 84_F 0.74 0.01
49_T 117_D 0.71 0.01
6_K 150_R 0.71 0.01
56_S 38_Q 0.71 0.01
76_K 55_V 0.70 0.01
79_V 93_P 0.70 0.01
75_F 11_I 0.70 0.01
58_V 17_A 0.68 0.01
20_L 50_E 0.68 0.01
62_L 116_T 0.67 0.01
59_A 80_I 0.67 0.01
36_P 140_R 0.67 0.01
72_V 67_V 0.66 0.01
91_Y 116_T 0.66 0.01
13_R 49_P 0.66 0.01
40_L 138_A 0.66 0.01
60_E 87_S 0.66 0.01
18_L 27_R 0.64 0.01
91_Y 150_R 0.64 0.01
35_L 115_V 0.64 0.01
48_G 56_Q 0.64 0.01
75_F 129_I 0.64 0.01
29_P 17_A 0.62 0.00
20_L 37_R 0.62 0.00
41_G 27_R 0.62 0.00
49_T 36_D 0.61 0.00
96_I 56_Q 0.61 0.00
13_R 117_D 0.61 0.00
20_L 10_M 0.61 0.00
70_I 137_E 0.61 0.00
60_E 61_Y 0.60 0.00
7_T 156_A 0.59 0.00
64_H 110_L 0.59 0.00
92_T 69_V 0.59 0.00
64_H 70_P 0.58 0.00
68_K 52_P 0.58 0.00
16_P 125_S 0.58 0.00
5_V 38_Q 0.58 0.00
35_L 12_L 0.58 0.00
62_L 146_A 0.58 0.00
74_K 31_L 0.58 0.00
44_K 109_I 0.58 0.00
93_E 59_G 0.58 0.00
98_E 63_R 0.57 0.00
73_S 78_H 0.57 0.00
61_V 21_A 0.57 0.00
98_E 109_I 0.57 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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