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OPENSEQ.org

L21 - L28
UniProt: P60492 - P60494
Length: 199
Sequences: 1104
Seq/Len: 6.73
I_Prob: 0.03
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2dV1 3v2fV1Contact Map
2j002j01V1 2j03V1Contact Map
4juw4juxV1Contact Map
4kix4kixRX 4kizRX 4kj1RX 4kj3RXContact Map
4kj54kj5RX 4kj7RX 4kj9RX 4kjbRXContact Map
2zjr2zjrOUContact Map
4btc4btdV1Contact Map
3uyd3uye2Z 3uyg2ZContact Map
3v223v23V1 3v25V1Contact Map
4gd13r8sRX 3r8tRXContact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
78_K 42_Q 0.99 0.03
31_A 44_P 0.73 0.01
17_G 47_Q 0.69 0.01
1_M 42_Q 0.67 0.01
83_R 5_C 0.66 0.01
1_M 15_A 0.63 0.01
56_S 11_R 0.63 0.01
94_L 10_K 0.59 0.01
17_G 65_S 0.58 0.01
5_V 43_Y 0.58 0.01
12_Y 18_I 0.58 0.01
7_T 35_T 0.57 0.01
78_K 3_K 0.57 0.01
75_F 37_I 0.56 0.01
83_R 49_V 0.56 0.01
76_K 67_I 0.56 0.01
4_I 71_Y 0.56 0.01
15_E 47_Q 0.55 0.01
31_A 48_K 0.54 0.01
7_T 39_K 0.53 0.01
96_I 50_R 0.51 0.01
76_K 42_Q 0.51 0.01
5_V 18_I 0.51 0.01
24_K 64_A 0.51 0.01
61_V 56_Q 0.51 0.01
75_F 53_V 0.50 0.01
41_G 61_R 0.50 0.01
5_V 37_I 0.49 0.01
39_L 3_K 0.48 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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