May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
L21 - S07
UniProt: P60492 - P17291
Length: 257
Sequences: 1134
Seq/Len: 4.41
I_Prob: 0.02
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cG 3v2dV 3v2eG 3v2fVContact Map
2j002j00G 2j01V 2j02G 2j03VContact Map
4juw4juwG 4juxVContact Map
4kix4kixR 4kiyG 4kizR 4kj0G 4kj1R 4kj2G 4kj3R 4kj4GContact Map
4kj54kj5R 4kj6G 4kj7R 4kj8G 4kj9R 4kjaG 4kjbR 4kjcGContact Map
3uyd3uydJ 3uye2 3uyfJ 3uyg2Contact Map
4gd13r8sR 3r8tR 4gd1G 4gd2GContact Map
3ohc3ohcG 3ohdG 3ohjV 3ohkVContact Map
3knh3knhG 3kniV 3knjG 3knkVContact Map
3ohy3ohyG 3ohzV 3oi0G 3oi1VContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
80_Q 76_R 1.01 0.02
63_G 124_L 0.87 0.01
71_L 83_A 0.85 0.01
85_K 20_D 0.84 0.01
29_P 114_R 0.83 0.01
80_Q 115_R 0.83 0.01
83_R 76_R 0.82 0.01
91_Y 138_K 0.81 0.01
93_E 100_A 0.79 0.01
33_V 56_Q 0.77 0.01
20_L 27_I 0.75 0.01
19_K 38_L 0.75 0.01
55_A 62_F 0.74 0.01
8_G 126_D 0.73 0.01
26_D 18_Y 0.72 0.01
22_V 147_A 0.72 0.01
15_E 154_Y 0.71 0.01
66_R 138_K 0.71 0.01
78_K 5_R 0.71 0.01
20_L 37_N 0.70 0.01
34_E 143_R 0.70 0.01
32_T 48_K 0.70 0.01
14_V 39_A 0.69 0.01
91_Y 40_A 0.66 0.01
17_G 152_A 0.65 0.01
19_K 21_V 0.65 0.01
83_R 80_V 0.65 0.01
83_R 105_V 0.64 0.01
64_H 105_V 0.64 0.01
79_V 76_R 0.64 0.01
65_G 16_L 0.63 0.01
62_L 128_A 0.63 0.01
56_S 139_E 0.63 0.01
76_K 4_R 0.62 0.01
41_G 133_G 0.62 0.01
63_G 138_K 0.62 0.01
29_P 41_R 0.62 0.01
41_G 76_R 0.62 0.01
40_L 54_T 0.62 0.01
96_I 60_K 0.62 0.01
2_F 8_E 0.62 0.01
83_R 2_A 0.62 0.01
62_L 43_F 0.61 0.01
15_E 128_A 0.61 0.01
64_H 91_V 0.61 0.01
8_G 134_A 0.60 0.01
95_L 143_R 0.60 0.01
52_V 31_M 0.60 0.01
77_A 131_K 0.60 0.01
18_L 53_K 0.60 0.01
40_L 21_V 0.59 0.01
70_I 143_R 0.59 0.01
9_G 81_G 0.59 0.01
36_P 110_Q 0.59 0.01
47_V 60_K 0.58 0.01
5_V 50_I 0.58 0.01
67_G 52_E 0.58 0.01
30_G 156_W 0.58 0.01
82_R 18_Y 0.58 0.01
23_E 73_M 0.57 0.01
15_E 29_K 0.57 0.01
85_K 149_R 0.57 0.01
85_K 8_E 0.57 0.01
2_F 101_L 0.57 0.01
44_K 52_E 0.57 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.2234 seconds.