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OPENSEQ.org

L20 - L30
UniProt: P60491 - Q5SHQ6
Length: 178
Sequences: 886
Seq/Len: 5.01
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2dU3 3v2fU3Contact Map
2j002j01U3 2j03U3Contact Map
4juw4juxU3Contact Map
4kix4kixQZ 4kizQZ 4kj1QZ 4kj3QZContact Map
4kj54kj5QZ 4kj7QZ 4kj9QZ 4kjbQZContact Map
2zjr2zjrNWContact Map
4btc4btdU3Contact Map
3uyd3uye1X 3uyg1XContact Map
4gd13r8sQZ 3r8tQZContact Map
3knh3kniU3 3knkU3Contact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
51_K 14_G 0.74 0.00
30_K 29_R 0.71 0.00
42_A 36_V 0.71 0.00
42_A 37_L 0.70 0.00
40_F 8_L 0.70 0.00
69_C 30_R 0.66 0.00
107_A 6_V 0.65 0.00
31_S 33_Q 0.65 0.00
79_F 60_E 0.61 0.00
114_K 8_L 0.60 0.00
33_R 41_P 0.60 0.00
65_I 27_G 0.59 0.00
79_F 35_R 0.57 0.00
68_A 55_R 0.57 0.00
63_V 5_K 0.57 0.00
63_V 38_E 0.57 0.00
2_P 56_V 0.57 0.00
91_D 25_A 0.56 0.00
6_T 19_Q 0.56 0.00
75_N 53_L 0.56 0.00
25_W 20_K 0.56 0.00
97_D 32_Q 0.55 0.00
96_A 9_V 0.55 0.00
87_G 53_L 0.55 0.00
29_S 32_Q 0.54 0.00
110_V 22_A 0.54 0.00
71_Q 24_K 0.53 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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