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OPENSEQ.org
L20 - S08
UniProt: P60491 - Q5SHQ2
Length: 256
Sequences: 1358
Seq/Len: 5.48
I_Prob: 0.02
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cH 3v2dU 3v2eH 3v2fUContact Map
2j002j00H 2j01U 2j02H 2j03UContact Map
4juw4juwH 4juxUContact Map
4kix4kixQ 4kiyH 4kizQ 4kj0H 4kj1Q 4kj2H 4kj3Q 4kj4HContact Map
4kj54kj5Q 4kj6H 4kj7Q 4kj8H 4kj9Q 4kjaH 4kjbQ 4kjcHContact Map
3uyd3uydK 3uye1 3uyfK 3uyg1Contact Map
4gd13r8sQ 3r8tQ 4gd1H 4gd2HContact Map
3knh3knhH 3kniU 3knjH 3knkUContact Map
3ohc3ohcH 3ohdH 3ohjU 3ohkUContact Map
3f1e3f1eH 3f1fU 3f1gH 3f1hUContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
14_H 115_S 0.96 0.02
14_H 135_C 0.96 0.02
80_I 105_R 0.88 0.01
36_R 16_A 0.86 0.01
79_F 44_F 0.83 0.01
28_R 32_K 0.81 0.01
115_A 109_I 0.78 0.01
110_V 129_V 0.77 0.01
13_K 88_K 0.77 0.01
56_D 24_T 0.76 0.01
33_R 122_R 0.73 0.01
7_G 48_Y 0.73 0.01
8_V 128_G 0.72 0.01
6_T 59_L 0.71 0.01
53_R 90_G 0.71 0.01
105_V 25_D 0.71 0.01
18_L 134_I 0.70 0.01
83_L 48_Y 0.69 0.01
23_G 80_I 0.69 0.01
36_R 3_T 0.69 0.01
43_G 112_L 0.68 0.01
40_F 91_R 0.68 0.01
98_L 133_L 0.68 0.01
91_D 101_P 0.67 0.01
20_L 91_R 0.65 0.01
94_N 76_P 0.65 0.01
14_H 16_A 0.65 0.01
73_G 105_R 0.65 0.01
2_P 23_S 0.65 0.01
53_R 111_I 0.65 0.01
68_A 99_E 0.64 0.01
17_I 123_E 0.64 0.01
16_K 135_C 0.64 0.01
16_K 13_I 0.64 0.01
107_A 129_V 0.64 0.01
93_K 116_K 0.64 0.01
82_G 29_S 0.63 0.01
62_I 137_V 0.62 0.01
41_A 100_I 0.62 0.01
10_R 9_M 0.62 0.01
17_I 120_T 0.62 0.01
41_A 45_I 0.62 0.01
36_R 104_R 0.62 0.01
13_K 120_T 0.61 0.01
104_Q 58_Y 0.61 0.01
41_A 78_Q 0.60 0.01
43_G 81_H 0.60 0.01
30_K 105_R 0.60 0.01
7_G 44_F 0.60 0.01
30_K 3_T 0.59 0.01
4_A 19_V 0.59 0.01
41_A 138_W 0.59 0.01
9_V 44_F 0.59 0.01
46_A 86_I 0.59 0.01
46_A 111_I 0.59 0.01
33_R 135_C 0.59 0.01
56_D 18_R 0.59 0.01
40_F 100_I 0.58 0.01
69_C 27_P 0.58 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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