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OPENSEQ.org
L20 - S12
UniProt: P60491 - Q5SHN3
Length: 250
Sequences: 956
Seq/Len: 3.97
I_Prob: 0.52
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cL 3v2dU 3v2eL 3v2fUContact Map
2j002j00L 2j01U 2j02L 2j03UContact Map
4juw4juwL 4juxUContact Map
4kix4kixQ 4kiyL 4kizQ 4kj0L 4kj1Q 4kj2L 4kj3Q 4kj4LContact Map
4kj54kj5Q 4kj6L 4kj7Q 4kj8L 4kj9Q 4kjaL 4kjbQ 4kjcLContact Map
3uyd3uydO 3uye1 3uyfO 3uyg1Contact Map
4gd13r8sQ 3r8tQ 4gd1L 4gd2LContact Map
3knh3knhL 3kniU 3knjL 3knkUContact Map
3ohc3ohcL 3ohdL 3ohjU 3ohkUContact Map
3ohy3ohyL 3ohzU 3oi0L 3oi1UContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
22_K 82_I 1.34 0.52
14_H 36_V 1.08 0.29
28_R 70_E 1.05 0.27
49_H 36_V 1.01 0.23
7_G 79_V 1.00 0.23
87_G 18_K 0.96 0.20
37_E 79_V 0.95 0.20
41_A 79_V 0.92 0.18
91_D 65_A 0.89 0.15
6_T 52_V 0.88 0.15
20_L 13_E 0.86 0.14
38_T 36_V 0.85 0.13
71_Q 111_K 0.84 0.13
30_K 20_K 0.83 0.13
110_V 5_N 0.83 0.12
6_T 38_R 0.82 0.12
75_N 54_K 0.82 0.12
75_N 105_A 0.82 0.12
43_G 68_P 0.82 0.12
26_G 79_V 0.81 0.12
36_R 104_A 0.81 0.11
112_R 109_D 0.81 0.11
56_D 65_A 0.80 0.11
103_P 119_T 0.80 0.11
13_K 27_A 0.79 0.10
2_P 81_L 0.78 0.10
42_A 15_V 0.78 0.10
90_V 15_V 0.77 0.10
53_R 58_T 0.77 0.10
74_L 14_K 0.76 0.09
38_T 59_S 0.75 0.09
103_P 109_D 0.75 0.09
98_L 14_K 0.75 0.09
96_A 11_G 0.74 0.09
31_S 68_P 0.74 0.08
36_R 79_V 0.73 0.08
116_A 101_V 0.73 0.08
90_V 10_K 0.73 0.08
63_V 113_S 0.72 0.08
75_N 113_S 0.72 0.08
10_R 79_V 0.72 0.08
6_T 112_K 0.71 0.07
14_H 38_R 0.71 0.07
30_K 104_A 0.71 0.07
2_P 108_K 0.70 0.07
14_H 65_A 0.69 0.07
6_T 59_S 0.69 0.07
4_A 112_K 0.69 0.07
16_K 93_V 0.69 0.07
8_V 40_V 0.69 0.07
104_Q 104_A 0.69 0.07
41_A 58_T 0.69 0.07
35_A 33_V 0.69 0.07
65_I 35_T 0.68 0.07
9_V 36_V 0.68 0.06
25_W 27_A 0.68 0.06
63_V 105_A 0.68 0.06
40_F 38_R 0.68 0.06
40_F 2_P 0.67 0.06
52_R 98_V 0.67 0.06
40_F 105_A 0.67 0.06
47_Y 17_K 0.66 0.06
32_F 60_G 0.66 0.06
17_I 56_R 0.66 0.06
46_A 116_K 0.66 0.06
115_A 56_R 0.66 0.06
38_T 108_K 0.65 0.06
52_R 25_K 0.65 0.06
16_K 88_K 0.65 0.06
102_E 81_L 0.65 0.06
39_L 35_T 0.65 0.06
53_R 104_A 0.65 0.06
112_R 121_K 0.64 0.05
46_A 79_V 0.64 0.05
10_R 40_V 0.64 0.05
87_G 20_K 0.64 0.05
52_R 105_A 0.63 0.05
17_I 70_E 0.63 0.05
2_P 27_A 0.63 0.05
30_K 53_A 0.63 0.05
117_Q 58_T 0.62 0.05
60_L 76_E 0.62 0.05
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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