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OPENSEQ.org
L20 - S20
UniProt: P60491 - P80380
Length: 224
Sequences: 1180
Seq/Len: 5.81
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cT 3v2dU 3v2eT 3v2fUContact Map
2j002j00T 2j01U 2j02T 2j03UContact Map
4juw4juwT 4juxUContact Map
4kix4kixQ 4kiyT 4kizQ 4kj0T 4kj1Q 4kj2T 4kj3Q 4kj4TContact Map
4kj54kj5Q 4kj6T 4kj7Q 4kj8T 4kj9Q 4kjaT 4kjbQ 4kjcTContact Map
3uyd3uydW 3uye1 3uyfW 3uyg1Contact Map
4gd13r8sQ 3r8tQ 4gd1T 4gd2TContact Map
3knh3knhT 3kniU 3knjT 3knkUContact Map
3ohc3ohcT 3ohdT 3ohjU 3ohkUContact Map
3ohy3ohyT 3ohzU 3oi0T 3oi1UContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
27_L 12_A 0.89 0.01
80_I 42_Q 0.80 0.01
40_F 9_N 0.75 0.00
93_K 55_I 0.74 0.00
42_A 61_S 0.69 0.00
68_A 33_I 0.69 0.00
18_L 86_R 0.68 0.00
51_K 13_L 0.68 0.00
57_F 40_A 0.67 0.00
107_A 67_A 0.66 0.00
86_A 53_L 0.65 0.00
91_D 51_E 0.65 0.00
109_L 92_L 0.64 0.00
108_E 46_E 0.64 0.00
25_W 80_R 0.63 0.00
71_Q 11_S 0.63 0.00
88_I 86_R 0.62 0.00
29_S 33_I 0.62 0.00
78_T 55_I 0.62 0.00
98_L 81_K 0.62 0.00
15_K 76_A 0.61 0.00
63_V 63_I 0.61 0.00
14_H 79_R 0.61 0.00
108_E 50_E 0.60 0.00
11_R 38_K 0.60 0.00
91_D 16_H 0.60 0.00
115_A 82_S 0.59 0.00
40_F 81_K 0.59 0.00
20_L 32_A 0.59 0.00
90_V 21_K 0.58 0.00
111_E 92_L 0.58 0.00
37_E 12_A 0.58 0.00
114_K 77_A 0.57 0.00
31_S 73_H 0.57 0.00
117_Q 70_S 0.57 0.00
100_V 19_S 0.57 0.00
24_Y 13_L 0.56 0.00
69_C 87_K 0.56 0.00
79_F 33_I 0.56 0.00
36_R 17_R 0.55 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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