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OPENSEQ.org

L20 - S04
UniProt: P60491 - P80373
Length: 327
Sequences: 1257
Seq/Len: 3.87
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cD 3v2dU 3v2eD 3v2fUContact Map
2j002j00D 2j01U 2j02D 2j03UContact Map
4juw4juwD 4juxUContact Map
4kix4kixQ 4kiyD 4kizQ 4kj0D 4kj1Q 4kj2D 4kj3Q 4kj4DContact Map
4kj54kj5Q 4kj6D 4kj7Q 4kj8D 4kj9Q 4kjaD 4kjbQ 4kjcDContact Map
3uyd3uydG 3uye1 3uyfG 3uyg1Contact Map
4gd13r8sQ 3r8tQ 4gd1D 4gd2DContact Map
3knh3knhD 3kniU 3knjD 3knkUContact Map
3ohc3ohcD 3ohdD 3ohjU 3ohkUContact Map
3ohy3ohyD 3ohzU 3oi0D 3oi1UContact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
12_R 49_R 0.87 0.00
43_G 15_E 0.84 0.00
56_D 121_V 0.79 0.00
30_K 203_V 0.78 0.00
14_H 201_Q 0.78 0.00
79_F 59_R 0.76 0.00
112_R 73_R 0.76 0.00
46_A 55_A 0.74 0.00
72_H 150_E 0.73 0.00
41_A 127_T 0.73 0.00
71_Q 142_P 0.72 0.00
59_R 166_K 0.72 0.00
6_T 171_G 0.70 0.00
68_A 145_E 0.69 0.00
49_H 65_R 0.69 0.00
102_E 11_L 0.69 0.00
15_K 106_Y 0.69 0.00
25_W 116_Q 0.68 0.00
75_N 198_V 0.68 0.00
68_A 152_S 0.67 0.00
59_R 37_P 0.66 0.00
8_V 209_R 0.66 0.00
74_L 86_K 0.65 0.00
83_L 126_I 0.65 0.00
96_A 183_G 0.65 0.00
53_R 208_S 0.64 0.00
109_L 51_P 0.64 0.00
21_A 121_V 0.64 0.00
52_R 111_A 0.64 0.00
9_V 176_L 0.64 0.00
108_E 95_G 0.63 0.00
79_F 81_E 0.63 0.00
80_I 183_G 0.63 0.00
80_I 156_E 0.62 0.00
91_D 154_N 0.62 0.00
41_A 197_P 0.62 0.00
51_K 7_P 0.62 0.00
37_E 17_V 0.61 0.00
73_G 70_I 0.61 0.00
34_K 153_R 0.60 0.00
42_A 110_F 0.60 0.00
46_A 149_A 0.60 0.00
2_P 79_F 0.59 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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