May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
L20 - S07
UniProt: P60491 - P17291
Length: 274
Sequences: 1156
Seq/Len: 4.23
I_Prob: 0.12
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cG 3v2dU 3v2eG 3v2fUContact Map
2j002j00G 2j01U 2j02G 2j03UContact Map
4juw4juwG 4juxUContact Map
4kix4kixQ 4kiyG 4kizQ 4kj0G 4kj1Q 4kj2G 4kj3Q 4kj4GContact Map
4kj54kj5Q 4kj6G 4kj7Q 4kj8G 4kj9Q 4kjaG 4kjbQ 4kjcGContact Map
3uyd3uydJ 3uye1 3uyfJ 3uyg1Contact Map
4gd13r8sQ 3r8tQ 4gd1G 4gd2GContact Map
3ohc3ohcG 3ohdG 3ohjU 3ohkUContact Map
3knh3knhG 3kniU 3knjG 3knkUContact Map
3ohy3ohyG 3ohzU 3oi0G 3oi1UContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
30_K 138_K 1.15 0.12
91_D 77_S 0.99 0.08
98_L 42_I 0.95 0.07
91_D 70_K 0.93 0.06
78_T 56_Q 0.86 0.05
17_I 50_I 0.86 0.05
14_H 22_L 0.81 0.04
2_P 84_N 0.80 0.04
27_L 119_R 0.78 0.04
2_P 43_F 0.78 0.04
6_T 119_R 0.76 0.03
98_L 11_Q 0.76 0.03
43_G 138_K 0.75 0.03
29_S 130_G 0.75 0.03
9_V 4_R 0.74 0.03
10_R 113_E 0.73 0.03
27_L 84_N 0.73 0.03
95_L 39_A 0.73 0.03
16_K 131_K 0.70 0.03
38_T 122_H 0.70 0.03
38_T 17_V 0.69 0.03
109_L 89_M 0.69 0.03
84_K 52_E 0.69 0.03
7_G 66_V 0.69 0.03
88_I 97_Q 0.68 0.02
40_F 140_D 0.68 0.02
59_R 53_K 0.67 0.02
22_K 64_Q 0.67 0.02
43_G 76_R 0.67 0.02
75_N 91_V 0.67 0.02
31_S 129_E 0.67 0.02
83_L 87_V 0.66 0.02
36_R 143_R 0.66 0.02
97_D 98_S 0.66 0.02
13_K 149_R 0.65 0.02
25_W 112_P 0.65 0.02
28_R 2_A 0.65 0.02
8_V 28_N 0.65 0.02
79_F 154_Y 0.64 0.02
97_D 40_A 0.64 0.02
53_R 117_A 0.64 0.02
19_K 152_A 0.63 0.02
14_H 23_V 0.63 0.02
43_G 4_R 0.63 0.02
30_K 136_K 0.63 0.02
89_E 140_D 0.63 0.02
98_L 18_Y 0.63 0.02
40_F 60_K 0.62 0.02
14_H 19_G 0.62 0.02
114_K 13_Q 0.62 0.02
52_R 14_P 0.62 0.02
40_F 138_K 0.61 0.02
49_H 40_A 0.61 0.02
53_R 43_F 0.61 0.02
68_A 68_N 0.61 0.02
22_K 152_A 0.61 0.02
85_K 18_Y 0.61 0.02
14_H 63_K 0.61 0.02
45_Y 115_R 0.60 0.02
79_F 8_E 0.60 0.02
8_V 30_I 0.60 0.02
30_K 6_R 0.60 0.02
83_L 5_R 0.60 0.02
47_Y 100_A 0.60 0.02
86_A 133_G 0.60 0.02
75_N 76_R 0.60 0.02
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.4012 seconds.