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OPENSEQ.org
L19 - L25
UniProt: P60490 - Q5SHZ1
Length: 352
Sequences: 1211
Seq/Len: 4.04
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2dTZ 3v2fTZContact Map
2j002j01TZ 2j03TZContact Map
4juw4juxTZContact Map
4kix4kixPV 4kizPV 4kj1PV 4kj3PVContact Map
4kj54kj5PV 4kj7PV 4kj9PV 4kjbPVContact Map
2zjr2zjrMSContact Map
4btc4btdTZContact Map
3uyd3uyeRV 3uygRVContact Map
3v223v23TZ 3v25TZContact Map
4gd13r8sPV 3r8tPVContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
53_R 72_R 0.98 0.01
34_V 76_L 0.98 0.01
6_L 124_I 0.94 0.01
34_V 9_Y 0.93 0.01
70_V 76_L 0.86 0.01
86_I 43_E 0.81 0.01
28_V 17_A 0.80 0.01
108_R 93_D 0.79 0.01
21_E 4_R 0.78 0.01
63_V 174_V 0.78 0.01
34_V 7_A 0.78 0.01
81_P 83_P 0.77 0.01
33_K 111_V 0.77 0.01
114_L 30_N 0.75 0.01
40_T 21_A 0.74 0.01
34_V 14_K 0.73 0.01
74_R 134_P 0.72 0.01
33_K 63_D 0.72 0.01
57_F 75_N 0.72 0.01
23_R 77_D 0.71 0.01
113_K 83_P 0.71 0.01
45_F 94_E 0.71 0.01
104_N 60_E 0.71 0.01
60_T 156_K 0.70 0.01
59_T 53_I 0.70 0.01
87_D 86_V 0.69 0.01
84_Q 47_V 0.68 0.01
28_V 178_E 0.66 0.01
65_K 16_S 0.65 0.01
65_K 115_G 0.65 0.01
57_F 84_E 0.65 0.01
66_V 141_V 0.64 0.01
51_R 59_L 0.63 0.01
105_L 40_D 0.63 0.00
84_Q 72_R 0.62 0.00
21_E 73_Q 0.62 0.00
45_F 74_V 0.62 0.00
81_P 25_P 0.61 0.00
75_I 36_K 0.61 0.00
19_L 43_E 0.61 0.00
8_K 89_F 0.61 0.00
44_D 47_V 0.61 0.00
70_V 98_M 0.61 0.00
78_L 144_L 0.60 0.00
15_V 93_D 0.60 0.00
114_L 28_M 0.60 0.00
75_I 110_G 0.60 0.00
111_R 72_R 0.59 0.00
5_A 16_S 0.59 0.00
106_S 77_D 0.59 0.00
87_D 127_K 0.59 0.00
97_A 167_P 0.59 0.00
9_L 124_I 0.59 0.00
4_G 24_L 0.58 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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