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OPENSEQ.org
L19 - S17
UniProt: P60490 - Q5SHP7
Length: 251
Sequences: 1138
Seq/Len: 5.75
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cQ 3v2dT 3v2eQ 3v2fTContact Map
2j002j00Q 2j01T 2j02Q 2j03TContact Map
4juw4juwQ 4juxTContact Map
4kix4kixP 4kiyQ 4kizP 4kj0Q 4kj1P 4kj2Q 4kj3P 4kj4QContact Map
4kj54kj5P 4kj6Q 4kj7P 4kj8Q 4kj9P 4kjaQ 4kjbP 4kjcQContact Map
3uyd3uydT 3uyeR 3uyfT 3uygRContact Map
4gd13r8sP 3r8tP 4gd1Q 4gd2QContact Map
3ohc3ohcQ 3ohdQ 3ohjT 3ohkTContact Map
3knh3knhQ 3kniT 3knjQ 3knkTContact Map
3ohy3ohyQ 3ohzT 3oi0Q 3oi1TContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
40_T 7_T 0.83 0.00
65_K 28_P 0.79 0.00
46_E 3_K 0.78 0.00
65_K 26_Q 0.74 0.00
82_L 44_A 0.70 0.00
93_R 71_F 0.66 0.00
110_I 80_G 0.66 0.00
39_R 39_S 0.66 0.00
34_V 26_Q 0.65 0.00
106_S 23_V 0.65 0.00
96_R 40_K 0.64 0.00
13_R 33_G 0.64 0.00
51_R 79_S 0.64 0.00
28_V 30_P 0.63 0.00
40_T 58_E 0.62 0.00
49_V 31_L 0.60 0.00
89_V 76_L 0.60 0.00
33_K 42_Y 0.59 0.00
21_E 30_P 0.58 0.00
34_V 73_V 0.58 0.00
70_V 43_L 0.58 0.00
80_S 67_K 0.58 0.00
9_L 16_Q 0.58 0.00
90_Q 9_V 0.56 0.00
44_D 18_T 0.56 0.00
9_L 23_V 0.56 0.00
68_Y 51_Y 0.56 0.00
8_K 79_S 0.56 0.00
82_L 6_L 0.55 0.00
75_I 35_V 0.55 0.00
112_R 4_K 0.55 0.00
96_R 70_R 0.55 0.00
84_Q 24_E 0.55 0.00
19_L 48_E 0.55 0.00
49_V 14_K 0.54 0.00
11_E 6_L 0.54 0.00
62_T 67_K 0.54 0.00
5_A 36_I 0.54 0.00
58_N 22_L 0.53 0.00
35_K 14_K 0.53 0.00
27_T 38_R 0.53 0.00
97_A 44_A 0.53 0.00
102_I 6_L 0.53 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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