May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
L19 - L29
UniProt: P60490 - Q5SHP6
Length: 218
Sequences: 1060
Seq/Len: 5.89
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2dT2 3v2fT2Contact Map
2j002j01T2 2j03T2Contact Map
4juw4juxT2Contact Map
4kix4kixPY 4kizPY 4kj1PY 4kj3PYContact Map
4kj54kj5PY 4kj7PY 4kj9PY 4kjbPYContact Map
2zjr2zjrMVContact Map
4btc4btdT2Contact Map
3uyd3uyeRW 3uygRWContact Map
4gd13r8sPY 3r8tPYContact Map
3knh3kniT2 3knkT2Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
96_R 49_K 0.80 0.00
80_S 63_V 0.75 0.00
22_F 42_G 0.70 0.00
60_T 41_I 0.70 0.00
66_V 51_R 0.69 0.00
66_V 70_Q 0.69 0.00
8_K 60_L 0.67 0.00
90_Q 17_S 0.67 0.00
19_L 21_L 0.67 0.00
86_I 50_I 0.67 0.00
100_Y 65_N 0.66 0.00
30_V 54_K 0.66 0.00
112_R 20_E 0.65 0.00
46_E 28_K 0.65 0.00
9_L 19_V 0.65 0.00
49_V 19_V 0.63 0.00
12_S 55_R 0.63 0.00
89_V 37_F 0.63 0.00
34_V 42_G 0.62 0.00
18_D 51_R 0.62 0.00
65_K 64_L 0.61 0.00
86_I 59_R 0.61 0.00
10_V 38_Q 0.60 0.00
23_R 50_I 0.59 0.00
46_E 42_G 0.59 0.00
96_R 46_Q 0.59 0.00
77_P 52_D 0.59 0.00
29_R 14_R 0.59 0.00
42_I 50_I 0.58 0.00
45_F 31_E 0.58 0.00
86_I 18_P 0.58 0.00
11_E 19_V 0.58 0.00
13_R 39_A 0.57 0.00
82_L 51_R 0.57 0.00
14_Y 31_E 0.57 0.00
28_V 60_L 0.57 0.00
72_V 40_S 0.57 0.00
46_E 29_K 0.56 0.00
65_K 48_H 0.56 0.00
60_T 21_L 0.56 0.00
106_S 47_N 0.56 0.00
21_E 26_R 0.55 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.4597 seconds.