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OPENSEQ.org
L19 - S10
UniProt: P60490 - Q5SHN7
Length: 251
Sequences: 835
Seq/Len: 3.88
I_Prob: 0.06
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cJ 3v2dT 3v2eJ 3v2fTContact Map
2j002j00J 2j01T 2j02J 2j03TContact Map
4juw4juwJ 4juxTContact Map
4kix4kixP 4kiyJ 4kizP 4kj0J 4kj1P 4kj2J 4kj3P 4kj4JContact Map
4kj54kj5P 4kj6J 4kj7P 4kj8J 4kj9P 4kjaJ 4kjbP 4kjcJContact Map
3uyd3uydM 3uyeR 3uyfM 3uygRContact Map
4gd13r8sP 3r8tP 4gd1J 4gd2JContact Map
3knh3knhJ 3kniT 3knjJ 3knkTContact Map
3ohc3ohcJ 3ohdJ 3ohjT 3ohkTContact Map
3ohy3ohyJ 3ohzT 3oi0J 3oi1TContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
110_I 31_G 1.09 0.06
39_R 20_A 1.02 0.04
115_R 11_F 1.01 0.04
45_F 11_F 1.00 0.04
83_I 12_D 0.94 0.04
62_T 13_H 0.92 0.03
61_F 34_V 0.89 0.03
97_A 2_P 0.89 0.03
24_P 34_V 0.86 0.03
93_R 16_L 0.85 0.03
111_R 92_T 0.83 0.02
111_R 56_H 0.83 0.02
90_Q 62_H 0.82 0.02
74_R 90_L 0.82 0.02
65_K 89_D 0.82 0.02
24_P 45_R 0.81 0.02
46_E 49_V 0.80 0.02
10_V 77_P 0.80 0.02
70_V 46_R 0.80 0.02
33_K 19_S 0.79 0.02
96_R 59_S 0.77 0.02
2_N 38_I 0.77 0.02
34_V 16_L 0.76 0.02
115_R 38_I 0.76 0.02
32_Y 13_H 0.75 0.02
49_V 91_P 0.74 0.02
40_T 18_A 0.73 0.02
112_R 38_I 0.73 0.02
114_L 13_H 0.72 0.02
28_V 75_I 0.72 0.02
113_K 50_I 0.72 0.02
40_T 69_N 0.72 0.02
90_Q 45_R 0.72 0.02
86_I 43_R 0.72 0.02
39_R 50_I 0.71 0.02
89_V 79_R 0.71 0.02
112_R 25_E 0.71 0.02
72_V 87_T 0.71 0.02
76_F 7_K 0.71 0.02
90_Q 72_V 0.71 0.02
61_F 12_D 0.71 0.01
58_N 72_V 0.70 0.01
104_N 21_Q 0.70 0.01
100_Y 52_G 0.69 0.01
96_R 63_F 0.69 0.01
80_S 15_T 0.69 0.01
76_F 4_I 0.69 0.01
106_S 79_R 0.69 0.01
28_V 68_H 0.68 0.01
90_Q 48_T 0.68 0.01
19_L 38_I 0.68 0.01
58_N 30_S 0.68 0.01
10_V 18_A 0.67 0.01
14_Y 83_E 0.67 0.01
8_K 55_K 0.66 0.01
54_R 50_I 0.66 0.01
57_F 100_T 0.66 0.01
70_V 21_Q 0.66 0.01
17_T 47_F 0.65 0.01
102_I 82_I 0.65 0.01
113_K 44_V 0.65 0.01
34_V 24_V 0.64 0.01
70_V 78_N 0.64 0.01
109_E 4_I 0.64 0.01
115_R 53_P 0.64 0.01
11_E 11_F 0.64 0.01
73_E 5_R 0.64 0.01
82_L 11_F 0.64 0.01
10_V 14_K 0.63 0.01
6_L 10_G 0.63 0.01
102_I 81_T 0.63 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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