May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
L19 - S12
UniProt: P60490 - Q5SHN3
Length: 278
Sequences: 845
Seq/Len: 3.51
I_Prob: 0.79
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cL 3v2dT 3v2eL 3v2fTContact Map
2j002j00L 2j01T 2j02L 2j03TContact Map
4juw4juwL 4juxTContact Map
4kix4kixP 4kiyL 4kizP 4kj0L 4kj1P 4kj2L 4kj3P 4kj4LContact Map
4kj54kj5P 4kj6L 4kj7P 4kj8L 4kj9P 4kjaL 4kjbP 4kjcLContact Map
3uyd3uydO 3uyeR 3uyfO 3uygRContact Map
4gd13r8sP 3r8tP 4gd1L 4gd2LContact Map
3knh3knhL 3kniT 3knjL 3knkTContact Map
3ohc3ohcL 3ohdL 3ohjT 3ohkTContact Map
3f1e3f1eL 3f1fT 3f1gL 3f1hTContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
65_K 36_V 1.51 0.79
46_E 79_V 1.33 0.66
82_L 70_E 1.29 0.62
42_I 20_K 1.13 0.46
114_L 109_D 1.10 0.43
106_S 104_A 1.00 0.33
102_I 102_Y 0.97 0.30
65_K 38_R 0.91 0.24
93_R 8_V 0.90 0.23
7_I 105_A 0.89 0.22
6_L 121_K 0.88 0.21
14_Y 104_A 0.87 0.21
109_E 56_R 0.86 0.21
96_R 53_A 0.85 0.20
12_S 15_V 0.85 0.20
8_K 121_K 0.83 0.18
76_F 93_V 0.83 0.18
6_L 105_A 0.80 0.16
40_T 108_K 0.79 0.15
61_F 34_C 0.79 0.15
105_L 97_I 0.79 0.15
83_I 25_K 0.78 0.15
13_R 58_T 0.77 0.14
96_R 20_K 0.77 0.14
46_E 30_R 0.76 0.14
80_S 120_K 0.76 0.13
34_V 24_L 0.75 0.13
39_R 27_A 0.74 0.12
90_Q 35_T 0.74 0.12
112_R 113_S 0.74 0.12
14_Y 2_P 0.74 0.12
16_R 17_K 0.74 0.12
104_N 17_K 0.74 0.12
28_V 15_V 0.71 0.11
39_R 105_A 0.71 0.11
45_F 18_K 0.71 0.11
14_Y 105_A 0.70 0.10
70_V 36_V 0.70 0.10
21_E 98_V 0.70 0.10
76_F 56_R 0.70 0.10
42_I 53_A 0.69 0.10
96_R 80_V 0.69 0.10
83_I 60_G 0.69 0.10
75_I 101_V 0.69 0.10
100_Y 27_A 0.69 0.10
75_I 122_P 0.69 0.10
60_T 101_V 0.68 0.09
7_I 36_V 0.68 0.09
19_L 55_V 0.67 0.09
92_G 49_L 0.67 0.09
32_Y 112_K 0.67 0.09
77_P 68_P 0.66 0.08
34_V 101_V 0.66 0.08
60_T 97_I 0.66 0.08
46_E 22_P 0.66 0.08
61_F 60_G 0.65 0.08
34_V 108_K 0.65 0.08
58_N 26_G 0.65 0.08
89_V 30_R 0.65 0.08
87_D 121_K 0.65 0.08
19_L 119_T 0.65 0.08
111_R 58_T 0.64 0.08
95_R 119_T 0.64 0.07
62_T 54_K 0.63 0.07
102_I 29_F 0.63 0.07
58_N 81_L 0.63 0.07
66_V 108_K 0.63 0.07
40_T 54_K 0.63 0.07
10_V 121_K 0.62 0.07
78_L 65_A 0.62 0.07
61_F 10_K 0.61 0.07
7_I 60_G 0.61 0.07
111_R 52_V 0.61 0.07
64_R 68_P 0.61 0.07
20_P 38_R 0.61 0.07
110_I 35_T 0.61 0.06
116_A 68_P 0.61 0.06
46_E 40_V 0.60 0.06
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.6591 seconds.