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OPENSEQ.org
L19 - S20
UniProt: P60490 - P80380
Length: 252
Sequences: 1228
Seq/Len: 6.08
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cT 3v2dT 3v2eT 3v2fTContact Map
2j002j00T 2j01T 2j02T 2j03TContact Map
4juw4juwT 4juxTContact Map
4kix4kixP 4kiyT 4kizP 4kj0T 4kj1P 4kj2T 4kj3P 4kj4TContact Map
4kj54kj5P 4kj6T 4kj7P 4kj8T 4kj9P 4kjaT 4kjbP 4kjcTContact Map
3uyd3uydW 3uyeR 3uyfW 3uygRContact Map
4gd13r8sP 3r8tP 4gd1T 4gd2TContact Map
3knh3knhT 3kniT 3knjT 3knkTContact Map
3ohc3ohcT 3ohdT 3ohjT 3ohkTContact Map
3ohy3ohyT 3ohzT 3oi0T 3oi1TContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
46_E 79_R 0.90 0.01
58_N 78_A 0.87 0.01
42_I 56_M 0.85 0.01
111_R 83_R 0.84 0.01
45_F 50_E 0.78 0.01
79_H 64_D 0.74 0.01
70_V 29_K 0.74 0.01
90_Q 34_K 0.67 0.00
93_R 21_K 0.65 0.00
32_Y 17_R 0.65 0.00
82_L 88_V 0.65 0.00
65_K 52_A 0.65 0.00
60_T 61_S 0.64 0.00
46_E 16_H 0.64 0.00
8_K 50_E 0.64 0.00
39_R 8_R 0.64 0.00
65_K 91_L 0.63 0.00
51_R 40_A 0.62 0.00
33_K 56_M 0.62 0.00
33_K 63_I 0.62 0.00
83_I 74_K 0.62 0.00
93_R 76_A 0.61 0.00
85_K 90_Q 0.61 0.00
74_R 34_K 0.61 0.00
89_V 80_R 0.60 0.00
60_T 25_R 0.60 0.00
7_I 25_R 0.60 0.00
114_L 52_A 0.59 0.00
70_V 68_K 0.59 0.00
39_R 59_A 0.58 0.00
111_R 27_K 0.58 0.00
21_E 82_S 0.58 0.00
106_S 31_S 0.57 0.00
113_K 23_R 0.57 0.00
26_D 8_R 0.56 0.00
50_I 75_N 0.56 0.00
57_F 44_A 0.55 0.00
17_T 82_S 0.55 0.00
39_R 89_R 0.55 0.00
65_K 14_K 0.55 0.00
87_D 50_E 0.54 0.00
8_K 67_A 0.54 0.00
14_Y 9_N 0.54 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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