May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
L19 - S13
UniProt: P60490 - P80377
Length: 272
Sequences: 1082
Seq/Len: 4.51
I_Prob: 0.04
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cM 3v2dT 3v2eM 3v2fTContact Map
2j002j00M 2j01T 2j02M 2j03TContact Map
4juw4juwM 4juxTContact Map
4kix4kixP 4kiyM 4kizP 4kj0M 4kj1P 4kj2M 4kj3P 4kj4MContact Map
4kj54kj5P 4kj6M 4kj7P 4kj8M 4kj9P 4kjaM 4kjbP 4kjcMContact Map
3uyd3uydP 3uyeR 3uyfP 3uygRContact Map
4gd13r8sP 3r8tP 4gd1M 4gd2MContact Map
3ohc3ohcM 3ohdM 3ohjT 3ohkTContact Map
3knh3knhM 3kniT 3knjM 3knkTContact Map
3f1e3f1eM 3f1fT 3f1gM 3f1hTContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
104_N 53_V 1.06 0.04
51_R 102_R 1.01 0.04
75_I 72_A 1.00 0.04
39_R 45_V 0.88 0.03
53_R 114_R 0.87 0.03
29_R 44_R 0.83 0.02
78_L 45_V 0.75 0.02
39_R 33_A 0.74 0.02
19_L 52_E 0.71 0.01
75_I 83_D 0.71 0.01
59_T 115_K 0.69 0.01
22_F 111_K 0.68 0.01
89_V 113_P 0.68 0.01
90_Q 65_K 0.68 0.01
62_T 11_R 0.67 0.01
84_Q 95_G 0.67 0.01
110_I 73_E 0.67 0.01
40_T 66_L 0.67 0.01
45_F 51_A 0.67 0.01
34_V 105_T 0.66 0.01
16_R 56_L 0.65 0.01
32_Y 115_K 0.65 0.01
115_R 53_V 0.64 0.01
28_V 30_A 0.64 0.01
86_I 38_G 0.64 0.01
6_L 118_A 0.64 0.01
56_G 99_R 0.63 0.01
17_T 30_A 0.63 0.01
9_L 30_A 0.63 0.01
105_L 118_A 0.63 0.01
98_K 69_E 0.62 0.01
51_R 69_E 0.62 0.01
77_P 111_K 0.62 0.01
84_Q 38_G 0.61 0.01
34_V 55_R 0.61 0.01
84_Q 55_R 0.61 0.01
6_L 90_L 0.61 0.01
86_I 87_Y 0.61 0.01
12_S 86_C 0.61 0.01
39_R 73_E 0.60 0.01
31_S 18_A 0.60 0.01
49_V 84_I 0.60 0.01
8_K 38_G 0.60 0.01
98_K 119_G 0.60 0.01
21_E 75_A 0.60 0.01
34_V 8_E 0.60 0.01
84_Q 37_T 0.59 0.01
68_Y 62_N 0.59 0.01
71_G 80_R 0.59 0.01
62_T 21_Y 0.59 0.01
86_I 36_K 0.59 0.01
19_L 95_G 0.59 0.01
92_G 111_K 0.58 0.01
70_V 12_N 0.58 0.01
46_E 48_L 0.58 0.01
74_R 57_R 0.57 0.01
9_L 35_E 0.57 0.01
8_K 81_L 0.57 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.4058 seconds.