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OPENSEQ.org
L19 - S03
UniProt: P60490 - P80372
Length: 385
Sequences: 998
Seq/Len: 3.04
I_Prob: 0.06
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cC 3v2dT 3v2eC 3v2fTContact Map
2j002j00C 2j01T 2j02C 2j03TContact Map
4juw4juwC 4juxTContact Map
4kix4kixP 4kiyC 4kizP 4kj0C 4kj1P 4kj2C 4kj3P 4kj4CContact Map
4kj54kj5P 4kj6C 4kj7P 4kj8C 4kj9P 4kjaC 4kjbP 4kjcCContact Map
3uyd3uydF 3uyeR 3uyfF 3uygRContact Map
4gd13r8sP 3r8tP 4gd1C 4gd2CContact Map
3knh3knhC 3kniT 3knjC 3knkTContact Map
3ohc3ohcC 3ohdC 3ohjT 3ohkTContact Map
3ohy3ohyC 3ohzT 3oi0C 3oi1TContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
42_I 82_E 1.15 0.06
104_N 88_R 1.11 0.05
65_K 53_A 1.05 0.04
84_Q 147_K 0.93 0.03
62_T 115_L 0.88 0.03
75_I 20_S 0.88 0.03
113_K 38_R 0.87 0.02
51_R 169_A 0.86 0.02
46_E 136_Q 0.84 0.02
62_T 181_N 0.82 0.02
87_D 91_L 0.81 0.02
35_K 44_E 0.81 0.02
79_H 169_A 0.81 0.02
65_K 86_V 0.80 0.02
70_V 18_W 0.80 0.02
106_S 185_G 0.80 0.02
54_R 203_F 0.79 0.02
21_E 154_S 0.79 0.02
75_I 88_R 0.78 0.02
53_R 111_L 0.78 0.02
78_L 101_L 0.78 0.02
65_K 173_V 0.77 0.02
83_I 19_E 0.76 0.02
100_Y 29_Y 0.75 0.02
46_E 143_E 0.75 0.02
65_K 126_R 0.74 0.02
83_I 86_V 0.74 0.01
106_S 88_R 0.74 0.01
10_V 129_A 0.73 0.01
104_N 124_I 0.73 0.01
75_I 91_L 0.72 0.01
109_E 66_V 0.72 0.01
84_Q 196_L 0.72 0.01
53_R 129_A 0.72 0.01
103_R 105_E 0.72 0.01
97_A 84_I 0.71 0.01
72_V 112_S 0.71 0.01
105_L 70_V 0.71 0.01
13_R 150_K 0.71 0.01
8_K 93_K 0.70 0.01
88_I 89_E 0.70 0.01
65_K 168_A 0.70 0.01
83_I 138_V 0.70 0.01
75_I 203_F 0.70 0.01
20_P 128_F 0.70 0.01
78_L 109_P 0.70 0.01
30_V 93_K 0.70 0.01
7_I 85_R 0.69 0.01
75_I 169_A 0.69 0.01
49_V 83_R 0.69 0.01
88_I 25_G 0.69 0.01
78_L 154_S 0.69 0.01
61_F 77_I 0.69 0.01
50_I 30_R 0.68 0.01
45_F 92_A 0.68 0.01
105_L 147_K 0.68 0.01
35_K 42_L 0.68 0.01
113_K 25_G 0.68 0.01
32_Y 103_V 0.68 0.01
39_R 54_R 0.68 0.01
11_E 110_N 0.68 0.01
93_R 150_K 0.67 0.01
73_E 105_E 0.67 0.01
28_V 186_F 0.67 0.01
48_I 52_L 0.67 0.01
51_R 18_W 0.66 0.01
113_K 94_L 0.66 0.01
30_V 69_H 0.66 0.01
113_K 182_I 0.66 0.01
34_V 181_N 0.66 0.01
61_F 187_A 0.66 0.01
4_G 12_L 0.66 0.01
91_R 33_L 0.66 0.01
6_L 38_R 0.66 0.01
96_R 18_W 0.65 0.01
106_S 110_N 0.65 0.01
55_N 35_E 0.65 0.01
110_I 133_A 0.65 0.01
89_V 195_V 0.64 0.01
98_K 140_R 0.64 0.01
105_L 37_Q 0.64 0.01
29_R 198_V 0.64 0.01
65_K 100_A 0.64 0.01
39_R 122_E 0.63 0.01
98_K 124_I 0.63 0.01
80_S 212_K 0.63 0.01
52_I 158_G 0.63 0.01
89_V 129_A 0.63 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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