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OPENSEQ.org
L19 - S02
UniProt: P60490 - P80371
Length: 402
Sequences: 1093
Seq/Len: 3.18
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cB 3v2dT 3v2eB 3v2fTContact Map
2j002j00B 2j01T 2j02B 2j03TContact Map
4juw4juwB 4juxTContact Map
4kix4kixP 4kiyB 4kizP 4kj0B 4kj1P 4kj2B 4kj3P 4kj4BContact Map
4kj54kj5P 4kj6B 4kj7P 4kj8B 4kj9P 4kjaB 4kjbP 4kjcBContact Map
3uyd3uydE 3uyeR 3uyfE 3uygRContact Map
4gd13r8sP 3r8tP 4gd1B 4gd2BContact Map
3knh3knhB 3kniT 3knjB 3knkTContact Map
3ohc3ohcB 3ohdB 3ohjT 3ohkTContact Map
3ohy3ohyB 3ohzT 3oi0B 3oi1TContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
83_I 187_L 1.04 0.01
65_K 140_H 1.00 0.01
61_F 105_F 0.90 0.01
57_F 31_Y 0.88 0.01
19_L 47_T 0.82 0.01
53_R 158_L 0.82 0.01
97_A 164_V 0.81 0.01
80_S 210_S 0.80 0.01
29_R 23_R 0.79 0.01
65_K 174_V 0.78 0.01
98_K 30_R 0.77 0.01
112_R 67_T 0.77 0.01
78_L 12_E 0.76 0.01
46_E 12_E 0.76 0.01
99_L 138_L 0.74 0.01
90_Q 193_D 0.73 0.01
105_L 31_Y 0.73 0.01
102_I 225_A 0.72 0.01
84_Q 81_V 0.72 0.01
116_A 225_A 0.71 0.01
72_V 21_R 0.70 0.01
34_V 193_D 0.70 0.01
8_K 109_S 0.69 0.01
72_V 20_E 0.69 0.01
40_T 33_Y 0.69 0.01
84_Q 78_Q 0.69 0.01
28_V 198_D 0.68 0.01
106_S 131_P 0.68 0.01
101_F 22_K 0.68 0.01
75_I 66_G 0.68 0.01
45_F 221_L 0.67 0.01
28_V 143_E 0.67 0.01
86_I 6_T 0.67 0.01
104_N 147_K 0.67 0.01
32_Y 219_V 0.67 0.01
98_K 94_N 0.67 0.01
32_Y 165_V 0.66 0.01
76_F 173_A 0.66 0.01
53_R 168_T 0.66 0.01
12_S 93_V 0.66 0.01
115_R 186_A 0.66 0.01
8_K 125_P 0.66 0.01
39_R 9_E 0.65 0.01
21_E 174_V 0.65 0.01
91_R 215_L 0.65 0.01
98_K 189_D 0.65 0.01
51_R 118_L 0.64 0.01
58_N 164_V 0.64 0.01
113_K 79_D 0.64 0.01
34_V 41_I 0.64 0.01
33_K 207_A 0.64 0.01
52_I 178_R 0.64 0.01
23_R 40_H 0.63 0.00
28_V 137_R 0.63 0.00
33_K 108_I 0.62 0.00
14_Y 56_R 0.62 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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