May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
L19 - L33
UniProt: P60490 - P35871
Length: 200
Sequences: 1045
Seq/Len: 6.15
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2dT6 3v2fT6Contact Map
2j002j01T6 2j03T6Contact Map
4juw4juxT6Contact Map
4kix4kixP1 4kizP1 4kj1P1 4kj3P1Contact Map
4kj54kj5P1 4kj7P1 4kj9P1 4kjbP1Contact Map
2zjr2zjrM1Contact Map
4btc4btdT6Contact Map
3uyd3uyeR6 3uygR6Contact Map
3v223v23T6 3v25T6Contact Map
4gd13r8sP1 3r8tP1Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
65_K 30_T 0.90 0.01
39_R 8_K 0.83 0.01
34_V 37_R 0.77 0.01
104_N 24_E 0.74 0.00
75_I 33_K 0.73 0.00
82_L 36_L 0.66 0.00
33_K 31_P 0.65 0.00
65_K 8_K 0.65 0.00
46_E 53_K 0.65 0.00
76_F 26_N 0.64 0.00
39_R 6_R 0.64 0.00
68_Y 28_R 0.63 0.00
81_P 49_H 0.62 0.00
32_Y 36_L 0.61 0.00
32_Y 12_E 0.60 0.00
100_Y 39_Y 0.60 0.00
113_K 6_R 0.58 0.00
93_R 7_I 0.58 0.00
4_G 53_K 0.58 0.00
52_I 31_P 0.57 0.00
52_I 2_A 0.57 0.00
38_N 9_L 0.57 0.00
56_G 8_K 0.57 0.00
17_T 32_N 0.56 0.00
63_V 39_Y 0.56 0.00
59_T 27_K 0.55 0.00
7_I 34_L 0.55 0.00
97_A 28_R 0.54 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.8272 seconds.