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OPENSEQ.org
L16 - S15
UniProt: P60489 - Q5SJ76
Length: 230
Sequences: 1190
Seq/Len: 5.24
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cO 3v2dQ 3v2eO 3v2fQContact Map
2j002j00O 2j01Q 2j02O 2j03QContact Map
4juw4juwO 4juxQContact Map
4kix4kixM 4kiyO 4kizM 4kj0O 4kj1M 4kj2O 4kj3M 4kj4OContact Map
4kj54kj5M 4kj6O 4kj7M 4kj8O 4kj9M 4kjaO 4kjbM 4kjcOContact Map
3ohc3ohcO 3ohdO 3ohjQ 3ohkQContact Map
3knh3knhO 3kniQ 3knjO 3knkQContact Map
3uz63uz6R 3uz7R 3uz8P 3uz9PContact Map
3oge3ogeO 3ogyO 3oh5Q 3oh7QContact Map
3uyd3uydR 3uyeP 3uyfR 3uygPContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
104_F 43_L 0.93 0.01
79_L 44_K 0.83 0.01
79_L 35_R 0.82 0.01
23_G 89_G 0.81 0.01
61_G 2_P 0.81 0.01
34_L 55_G 0.81 0.01
37_L 41_E 0.79 0.01
80_E 60_V 0.79 0.01
101_R 2_P 0.76 0.01
123_H 62_Q 0.75 0.01
131_I 17_R 0.74 0.01
67_R 65_R 0.73 0.01
77_K 87_I 0.68 0.00
29_F 1_M 0.67 0.00
99_P 53_H 0.67 0.00
18_K 41_E 0.66 0.00
122_G 73_E 0.66 0.00
38_E 83_E 0.66 0.00
43_T 46_H 0.65 0.00
85_K 72_R 0.65 0.00
136_A 16_A 0.65 0.00
50_A 31_L 0.65 0.00
18_K 5_K 0.64 0.00
18_K 75_P 0.64 0.00
131_I 77_R 0.64 0.00
71_D 59_M 0.63 0.00
108_G 12_I 0.63 0.00
74_Y 35_R 0.62 0.00
71_D 35_R 0.62 0.00
63_K 89_G 0.61 0.00
2_L 33_T 0.61 0.00
126_P 65_R 0.60 0.00
61_G 61_G 0.60 0.00
81_V 35_R 0.59 0.00
63_K 44_K 0.59 0.00
79_L 61_G 0.59 0.00
132_V 39_L 0.58 0.00
132_V 15_F 0.58 0.00
61_G 16_A 0.58 0.00
116_E 30_A 0.58 0.00
52_V 89_G 0.57 0.00
85_K 38_R 0.57 0.00
128_K 46_H 0.57 0.00
101_R 29_V 0.57 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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