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OPENSEQ.org
L16 - S05
UniProt: P60489 - Q5SHQ5
Length: 303
Sequences: 1030
Seq/Len: 3.49
I_Prob: 0.07
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cE 3v2dQ 3v2eE 3v2fQContact Map
2j002j00E 2j01Q 2j02E 2j03QContact Map
4juw4juwE 4juxQContact Map
4kix4kixM 4kiyE 4kizM 4kj0E 4kj1M 4kj2E 4kj3M 4kj4EContact Map
4kj54kj5M 4kj6E 4kj7M 4kj8E 4kj9M 4kjaE 4kjbM 4kjcEContact Map
3knh3knhE 3kniQ 3knjE 3knkQContact Map
3ohc3ohcE 3ohdE 3ohjQ 3ohkQContact Map
3uz63uz6H 3uz7H 3uz8P 3uz9PContact Map
3oge3ogeE 3ogyE 3oh5Q 3oh7QContact Map
3uyd3uydH 3uyeP 3uyfH 3uygPContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
45_Q 119_L 1.13 0.07
3_M 27_R 1.10 0.06
1_M 16_T 1.06 0.05
42_I 105_V 1.05 0.05
73_P 16_T 0.94 0.04
135_D 117_D 0.91 0.03
60_R 24_R 0.91 0.03
50_A 24_R 0.90 0.03
65_F 104_A 0.87 0.03
113_Q 148_V 0.85 0.03
80_E 26_F 0.85 0.03
103_M 4_T 0.84 0.03
67_R 48_A 0.83 0.03
44_A 126_R 0.80 0.02
73_P 98_T 0.80 0.02
102_V 145_K 0.79 0.02
29_F 48_A 0.79 0.02
78_P 26_F 0.79 0.02
118_L 122_E 0.78 0.02
93_Y 17_A 0.78 0.02
29_F 27_R 0.78 0.02
104_F 34_V 0.77 0.02
80_E 101_I 0.76 0.02
29_F 119_L 0.76 0.02
79_L 98_T 0.75 0.02
95_A 33_V 0.74 0.02
127_I 63_R 0.74 0.02
111_E 52_P 0.73 0.02
134_R 122_E 0.73 0.02
71_D 127_N 0.73 0.02
73_P 75_T 0.73 0.02
83_M 83_E 0.72 0.02
67_R 145_K 0.72 0.02
106_V 143_R 0.71 0.02
78_P 8_E 0.71 0.02
13_Q 48_A 0.70 0.02
136_A 133_Y 0.70 0.02
56_R 30_A 0.70 0.02
33_G 50_E 0.70 0.02
121_A 18_R 0.70 0.01
14_R 132_A 0.70 0.01
32_Y 148_V 0.69 0.01
79_L 43_L 0.69 0.01
104_F 122_E 0.68 0.01
49_A 136_M 0.68 0.01
37_L 61_Y 0.68 0.01
106_V 76_I 0.68 0.01
29_F 25_R 0.67 0.01
13_Q 74_G 0.67 0.01
28_A 17_A 0.67 0.01
80_E 127_N 0.67 0.01
134_R 19_M 0.66 0.01
79_L 101_I 0.66 0.01
37_L 127_N 0.65 0.01
134_R 17_A 0.65 0.01
112_E 137_E 0.65 0.01
11_K 27_R 0.65 0.01
76_K 53_L 0.64 0.01
35_V 58_A 0.64 0.01
32_Y 83_E 0.64 0.01
68_I 90_V 0.64 0.01
90_V 128_P 0.64 0.01
89_N 87_S 0.64 0.01
101_R 73_N 0.64 0.01
82_R 130_N 0.63 0.01
29_F 129_I 0.63 0.01
108_G 46_G 0.63 0.01
101_R 60_Y 0.63 0.01
120_I 30_A 0.63 0.01
60_R 107_R 0.63 0.01
115_M 30_A 0.62 0.01
45_Q 133_Y 0.62 0.01
93_Y 18_R 0.62 0.01
119_R 36_D 0.62 0.01
80_E 98_T 0.62 0.01
136_A 3_E 0.62 0.01
89_N 91_L 0.62 0.01
54_M 6_F 0.62 0.01
72_K 76_I 0.62 0.01
32_Y 131_I 0.62 0.01
25_D 109_I 0.62 0.01
26_Y 141_Q 0.61 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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