OPENSEQ.org
L16 - L18
UniProt: P60489 - Q5SHQ4
Length: 253
Sequences: 1118
Seq/Len: 4.51
I_Prob: 0.03
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
1vqo1vqoHNContact Map
1vq81vq8HNContact Map
1vqp1vqpHNContact Map
1vqm1vqmHNContact Map
1vql1vqlHNContact Map
1vqk1vqkHNContact Map
1yhq1yhqHNContact Map
1s721s72HNContact Map
1vq91vq9HNContact Map
1vqn1vqnHNContact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
42_I 12_F 1.03 0.03
125_L 9_R 0.89 0.02
102_V 67_R 0.86 0.02
98_K 73_L 0.85 0.02
76_K 99_K 0.85 0.02
85_K 60_G 0.81 0.02
23_G 10_R 0.78 0.01
16_R 92_Y 0.77 0.01
113_Q 64_E 0.75 0.01
67_R 55_A 0.74 0.01
45_Q 100_A 0.72 0.01
11_K 23_R 0.72 0.01
13_Q 27_S 0.72 0.01
131_I 61_N 0.70 0.01
73_P 79_A 0.69 0.01
118_L 10_R 0.69 0.01
38_E 73_L 0.67 0.01
52_V 33_K 0.67 0.01
62_G 70_G 0.66 0.01
110_T 103_E 0.66 0.01
28_A 74_A 0.65 0.01
42_I 16_N 0.65 0.01
79_L 86_A 0.65 0.01
110_T 5_T 0.64 0.01
110_T 8_E 0.64 0.01
122_G 44_K 0.63 0.01
11_K 27_S 0.63 0.01
28_A 37_A 0.63 0.01
119_R 28_V 0.63 0.01
108_G 36_Y 0.63 0.01
59_R 75_E 0.62 0.01
101_R 72_A 0.62 0.01
101_R 30_R 0.62 0.01
33_G 31_S 0.62 0.01
33_G 45_G 0.61 0.01
131_I 91_P 0.60 0.01
73_P 81_G 0.60 0.01
125_L 39_I 0.60 0.01
55_V 36_Y 0.59 0.01
58_F 34_H 0.59 0.01
101_R 13_R 0.59 0.01
17_L 50_S 0.58 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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