OPENSEQ.org
L16 - L24
UniProt: P60489 - Q5SHP9
Length: 251
Sequences: 1152
Seq/Len: 4.80
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2dQY 3v2fQYContact Map
2j002j01QY 2j03QYContact Map
4juw4juxQYContact Map
4kix4kixMU 4kizMU 4kj1MU 4kj3MUContact Map
4kj54kj5MU 4kj7MU 4kj9MU 4kjbMUContact Map
2zjr2zjrJRContact Map
4btc4btdQYContact Map
3uyd3uyePU 3uygPUContact Map
4gd13r8sMU 3r8tMUContact Map
3knh3kniQY 3knkQYContact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
85_K 69_A 0.81 0.00
110_T 54_K 0.74 0.00
93_Y 65_A 0.69 0.00
55_V 8_K 0.67 0.00
41_W 65_A 0.67 0.00
93_Y 16_A 0.66 0.00
104_F 41_G 0.64 0.00
130_K 50_R 0.64 0.00
65_F 49_V 0.62 0.00
31_D 72_V 0.61 0.00
14_R 72_V 0.61 0.00
80_E 33_K 0.58 0.00
132_V 42_V 0.58 0.00
38_E 107_D 0.58 0.00
115_M 67_L 0.57 0.00
18_K 4_K 0.57 0.00
89_N 62_E 0.57 0.00
31_D 107_D 0.57 0.00
112_E 62_E 0.57 0.00
120_I 51_V 0.57 0.00
96_V 12_T 0.56 0.00
119_R 68_H 0.56 0.00
130_K 51_V 0.56 0.00
106_V 56_P 0.55 0.00
79_L 40_E 0.55 0.00
103_M 38_I 0.54 0.00
89_N 22_G 0.54 0.00
101_R 39_V 0.54 0.00
131_I 6_H 0.54 0.00
33_G 8_K 0.54 0.00
14_R 84_R 0.54 0.00
28_A 24_V 0.54 0.00
85_K 30_V 0.54 0.00
35_V 47_K 0.53 0.00
6_R 50_R 0.53 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.017 seconds.