OPENSEQ.org
L16 - S17
UniProt: P60489 - Q5SHP7
Length: 246
Sequences: 1077
Seq/Len: 4.89
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cQ 3v2dQ 3v2eQ 3v2fQContact Map
2j002j00Q 2j01Q 2j02Q 2j03QContact Map
4juw4juwQ 4juxQContact Map
4kix4kixM 4kiyQ 4kizM 4kj0Q 4kj1M 4kj2Q 4kj3M 4kj4QContact Map
4kj54kj5M 4kj6Q 4kj7M 4kj8Q 4kj9M 4kjaQ 4kjbM 4kjcQContact Map
3knh3knhQ 3kniQ 3knjQ 3knkQContact Map
3ohc3ohcQ 3ohdQ 3ohjQ 3ohkQContact Map
3uz63uz6T 3uz7T 3uz8P 3uz9PContact Map
3oge3ogeQ 3ogyQ 3oh5Q 3oh7QContact Map
3uyd3uydT 3uyeP 3uyfT 3uygPContact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
104_F 35_V 0.80 0.00
67_R 25_R 0.79 0.00
134_R 23_V 0.78 0.00
85_K 36_I 0.76 0.00
27_V 5_V 0.75 0.00
76_K 72_R 0.74 0.00
93_Y 73_V 0.74 0.00
11_K 25_R 0.73 0.00
11_K 71_F 0.72 0.00
45_Q 26_Q 0.68 0.00
78_P 71_F 0.67 0.00
135_D 33_G 0.67 0.00
42_I 81_R 0.66 0.00
6_R 36_I 0.66 0.00
53_A 61_E 0.65 0.00
38_E 24_E 0.65 0.00
52_V 72_R 0.65 0.00
79_L 73_V 0.64 0.00
66_I 34_K 0.63 0.00
97_V 40_K 0.62 0.00
3_M 30_P 0.61 0.00
94_V 36_I 0.60 0.00
25_D 51_Y 0.59 0.00
42_I 67_K 0.59 0.00
13_Q 76_L 0.59 0.00
34_L 3_K 0.59 0.00
76_K 35_V 0.58 0.00
23_G 7_T 0.58 0.00
22_K 5_V 0.58 0.00
90_V 42_Y 0.58 0.00
35_V 31_L 0.58 0.00
129_T 60_I 0.58 0.00
42_I 78_E 0.57 0.00
44_A 27_F 0.56 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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