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OPENSEQ.org
L16 - L29
UniProt: P60489 - Q5SHP6
Length: 213
Sequences: 936
Seq/Len: 4.63
I_Prob: 0.02
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
1vqo1vqoHVContact Map
1vq81vq8HVContact Map
1vqp1vqpHVContact Map
1vqm1vqmHVContact Map
1vql1vqlHVContact Map
1vqk1vqkHVContact Map
1yhq1yhqHVContact Map
1s721s72HVContact Map
1vq91vq9HVContact Map
1vqn1vqnHVContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
54_M 63_V 1.00 0.02
90_V 46_Q 0.88 0.01
104_F 29_K 0.84 0.01
99_P 25_V 0.83 0.01
63_K 20_E 0.82 0.01
127_I 50_I 0.81 0.01
118_L 59_R 0.80 0.01
66_I 35_L 0.78 0.01
7_M 59_R 0.75 0.01
61_G 36_R 0.73 0.01
59_R 17_S 0.73 0.01
123_H 39_A 0.72 0.01
68_I 68_R 0.72 0.01
119_R 24_L 0.72 0.01
76_K 51_R 0.71 0.01
25_D 57_I 0.70 0.01
118_L 64_L 0.68 0.01
39_P 37_F 0.68 0.01
33_G 59_R 0.67 0.01
49_A 18_P 0.65 0.01
23_G 65_N 0.65 0.01
101_R 31_E 0.64 0.01
80_E 14_R 0.63 0.01
83_M 29_K 0.63 0.01
42_I 52_D 0.63 0.01
83_M 34_E 0.63 0.01
58_F 13_A 0.62 0.01
123_H 55_R 0.62 0.01
131_I 60_L 0.62 0.01
49_A 20_E 0.61 0.01
96_V 57_I 0.60 0.01
121_A 56_Q 0.60 0.01
36_A 29_K 0.60 0.01
108_G 71_N 0.59 0.01
23_G 39_A 0.59 0.01
103_M 30_R 0.59 0.01
69_F 20_E 0.59 0.01
123_H 32_L 0.59 0.01
101_R 29_K 0.59 0.01
3_M 55_R 0.58 0.01
56_R 43_Q 0.58 0.01
58_F 63_V 0.58 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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